Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 5.0e-285 983.8 511 100.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 2.3e-205 719.2 404 94.3
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.5e-201 706.4 457 83.8
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 9.4e-199 697.2 391 94.4
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 4.1e-146 522.3 393 69.0
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.1e-145 520.0 391 68.8
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 2.1e-145 520.0 405 67.9
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 6.2e-142 508.4 391 67.3
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 5.2e-141 505.4 400 66.2
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 2.7e-137 493.0 338 75.7
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 7.3e-135 485.0 392 65.8
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 6.2e-134 481.9 393 64.9
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 8.1e-134 481.5 391 65.0
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.4e-133 480.7 391 66.0
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 3.1e-133 479.6 335 73.1
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 5.2e-133 478.8 404 64.4
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.2e-131 473.4 391 65.2
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.4e-130 470.7 388 63.7
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 1.9e-130 470.3 403 63.0
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 3.2e-130 469.5 375 65.6
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 4.2e-130 469.2 323 73.1
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 7.1e-130 468.4 394 64.2
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.5e-129 466.1 391 62.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 6.0e-129 465.3 388 62.6
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 6.0e-129 465.3 369 65.9
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.0e-128 464.5 396 63.4
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 1.7e-128 463.8 342 69.6
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 3.0e-128 463.0 397 62.7
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.9e-128 462.6 382 64.7
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 5.1e-128 462.2 364 65.9
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.1e-128 462.2 364 65.9
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 6.6e-128 461.8 337 69.7
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.5e-127 460.7 397 62.7
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 3.3e-127 459.5 394 64.7
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 3.3e-127 459.5 383 64.8
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 5.6e-127 458.8 346 67.9
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 7.3e-127 458.4 393 62.8
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 9.6e-127 458.0 397 62.0
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 9.6e-127 458.0 336 69.6
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 6.2e-126 455.3 346 67.6
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.1e-126 454.9 314 72.6
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.4e-125 454.1 392 63.5
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.4e-125 453.4 317 72.6
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 4.0e-125 452.6 336 69.3
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 9.0e-125 451.4 332 69.3
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.2e-124 451.1 331 69.2
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 1.2e-124 451.1 393 62.8
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 5.8e-124 448.7 376 63.0
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 6.4e-123 445.3 337 66.2
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 2.1e-121 440.3 336 66.4
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.0e-120 438.0 370 61.4
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.8e-120 437.2 337 65.9
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 2.3e-120 436.8 336 67.9
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 3.0e-120 436.4 378 60.8
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 3.0e-120 436.4 340 65.3
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 3.9e-120 436.0 376 60.6
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 1.1e-119 434.5 337 65.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.5e-119 434.1 340 65.6
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.5e-119 434.1 340 65.6
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 1.9e-119 433.7 395 60.0
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.6e-118 430.6 333 66.4
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 3.7e-118 429.5 336 64.3
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 3.1e-117 426.4 337 67.7
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.5e-116 424.1 380 57.6
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 7.6e-116 421.8 333 65.5
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.7e-115 420.6 333 65.2
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.9e-115 419.1 295 71.9
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 4.9e-115 419.1 323 64.4
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 2.4e-114 416.8 364 58.5
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.5e-114 415.6 379 59.4
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.7e-113 413.3 314 66.2
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 7.9e-113 411.8 286 71.7
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 1.0e-112 411.4 322 64.6
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 1.3e-112 411.0 327 62.1
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 2.3e-112 410.2 397 56.7
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 5.1e-112 409.1 335 63.0
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 3.3e-111 406.4 386 57.5
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 3.3e-111 406.4 326 64.4
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 5.6e-111 405.6 292 70.5
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.6e-111 405.6 306 66.0
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.3e-110 404.4 409 55.7
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 8.2e-110 401.7 347 62.0
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 1.4e-109 401.0 367 56.9
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 2.4e-109 400.2 337 62.6
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 6.9e-109 398.7 369 58.0
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 9.0e-109 398.3 410 54.4
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 7.9e-105 385.2 333 59.5
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.9e-104 382.9 283 70.0
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.2e-102 377.1 256 74.2
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 6.7e-96 355.5 314 61.1
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.3e-95 353.2 321 57.6
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.7e-94 350.9 246 70.3
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 1.0e-91 341.7 228 74.1
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 2.2e-91 340.5 343 55.4
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 7.2e-90 335.5 319 57.7
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 1.2e-89 334.7 304 54.6
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.3e-86 324.7 346 49.4
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 3.4e-84 316.6 285 60.0
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 7.7e-84 315.5 312 53.8
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 1.9e-82 310.8 362 46.7
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 7.4e-79 298.9 323 54.2
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.4e-77 293.9 198 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 5.9e-76 289.3 311 48.9
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 2.5e-74 283.9 188 75.0
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.7e-73 279.6 271 57.9
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 1.8e-72 277.7 250 58.0
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 4.2e-66 256.5 179 73.2
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 1.8e-64 251.1 228 57.9
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 1.1e-61 241.9 159 77.4
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 2.7e-60 237.3 244 54.5
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-59 234.6 200 62.0
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 5.2e-56 223.0 290 42.4
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 6.1e-49 199.5 270 42.6
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 5.2e-48 196.4 300 43.3
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 4.3e-42 176.8 137 65.0
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.2e-39 168.7 297 34.0
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 8.3e-30 136.0 105 64.8
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 9.2e-29 132.5 233 39.5
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 6.6e-27 126.3 129 52.7
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 8.9e-24 115.9 83 75.9
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 8.9e-24 115.9 229 38.0
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.1e-21 109.0 83 71.1
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.9e-13 81.6 62 64.5
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.7e-11 75.1 53 62.3
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.1e-08 65.9 46 69.6


User provided reference genes

Program Settings