Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 0.0e+00 1207.6 626 100.0
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 2.6e-299 1031.6 626 87.7
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.2e-281 971.5 686 77.7
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.6e-277 958.0 626 82.1
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 4.6e-264 914.4 626 77.6
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 7.3e-262 907.1 626 76.5
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.5e-259 899.4 626 76.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 7.6e-259 897.1 665 73.2
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 3.8e-258 894.8 626 75.7
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 2.4e-257 892.1 627 75.0
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 2.4e-257 892.1 626 76.5
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 3.2e-257 891.7 625 75.8
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.2e-256 889.8 626 76.2
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.6e-256 889.4 626 75.4
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.3e-255 886.3 626 75.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.3e-255 886.3 626 75.2
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 5.1e-255 884.4 626 75.1
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 4.3e-254 881.3 626 75.6
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 9.6e-254 880.2 627 74.6
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 3.6e-253 878.2 628 75.5
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.1e-252 876.7 626 75.6
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.8e-252 875.9 627 74.8
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.4e-252 875.5 627 75.0
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 3.1e-252 875.2 626 75.1
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.2e-251 873.2 626 74.8
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.5e-251 872.8 626 75.1
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 7.6e-251 870.5 626 74.3
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 9.9e-251 870.2 626 74.3
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 3.8e-250 868.2 626 73.6
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 7.1e-249 864.0 626 74.1
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.1e-248 862.4 627 73.8
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.3e-247 859.0 627 73.8
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 3.0e-247 858.6 626 73.5
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 3.0e-247 858.6 626 73.5
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.9e-246 855.9 627 72.2
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 2.5e-246 855.5 626 74.0
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 3.1e-244 848.6 627 71.5
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 4.0e-244 848.2 626 72.5
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 4.5e-243 844.7 626 73.6
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 4.9e-242 841.3 622 73.2
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.9e-241 839.3 627 71.9
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 4.2e-241 838.2 627 71.3
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 1.0e-239 833.6 627 71.3
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.3e-239 832.4 627 72.1
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 8.7e-239 830.5 627 70.7
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.9e-238 829.3 627 72.7
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.1e-236 823.5 630 71.7
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.9e-236 820.8 622 72.0
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 3.4e-235 818.5 627 71.6
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 4.5e-235 818.1 641 70.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.9e-234 814.7 625 71.7
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 4.9e-234 814.7 626 70.1
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 6.5e-234 814.3 580 74.8
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 6.5e-234 814.3 627 71.1
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.2e-232 810.1 627 69.2
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.2e-232 810.1 678 67.8
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 2.5e-230 802.4 626 68.4
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 2.4e-228 795.8 604 70.4
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.4e-228 795.8 611 72.0
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 9.0e-228 793.9 625 68.6
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.0e-226 790.4 626 69.2
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 8.4e-226 787.3 627 67.3
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 8.4e-226 787.3 626 68.1
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.9e-225 786.2 630 68.1
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 4.2e-225 785.0 578 72.8
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 1.9e-222 776.2 631 66.7
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 7.4e-222 774.2 641 67.2
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 1.2e-219 766.9 579 70.8
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 5.9e-219 764.6 627 64.6
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 7.2e-217 757.7 626 65.7
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.3e-215 752.7 626 65.5
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.3e-215 752.7 627 64.9
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 5.1e-215 751.5 626 65.2
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 6.7e-215 751.1 626 65.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 8.8e-215 750.7 626 65.3
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 2.0e-214 749.6 627 65.4
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 2.0e-214 749.6 627 65.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.8e-213 745.7 627 64.4
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 4.8e-213 745.0 609 66.7
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 2.0e-211 739.6 641 64.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.3e-210 736.9 626 64.4
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.2e-209 732.3 627 64.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.2e-209 732.3 626 64.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 3.6e-208 728.8 597 66.2
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.6e-208 728.8 598 66.2
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 6.1e-208 728.0 627 63.6
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.1e-206 723.8 626 64.4
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.2e-205 719.5 577 67.4
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 2.3e-199 699.5 660 62.0
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 3.6e-192 675.6 541 68.4
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.0e-182 643.3 458 75.3
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 3.6e-168 595.9 499 63.3
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 3.1e-167 592.8 520 60.8
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 5.2e-167 592.0 627 53.0
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 4.4e-166 589.0 628 53.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.3e-162 576.6 628 51.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.5e-161 573.2 605 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 3.0e-154 549.7 628 50.6
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 3.3e-145 519.6 364 76.4
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 6.9e-143 511.9 632 45.9
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 8.4e-141 505.0 447 62.4
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.6e-136 490.7 582 52.2
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 3.6e-136 489.6 331 80.4
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.2e-124 449.9 374 65.2
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.0e-122 444.9 383 61.4
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 6.7e-114 415.6 421 52.7
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 8.2e-112 408.7 300 70.3
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 2.2e-77 294.3 208 76.9
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 3.0e-74 283.9 613 33.9
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 8.8e-74 282.3 197 73.6
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.0e-65 254.6 200 70.0
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.0e-58 232.3 169 68.6
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 4.9e-56 223.4 161 73.9
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.0e-51 206.1 205 51.2
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 9.8e-49 199.1 155 68.4
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 5.2e-34 150.2 198 47.0
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 1.9e-31 141.7 158 52.5
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 1.9e-31 141.7 158 52.5
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.4e-31 141.4 178 47.8
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.7e-30 137.9 91 75.8
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 4.6e-30 137.1 130 54.6
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 6.6e-29 133.3 188 44.7
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 3.6e-27 127.5 130 55.4
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.6e-25 119.8 129 53.5
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.8e-24 117.5 77 72.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 1.7e-21 108.6 58 89.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 7.6e-17 93.2 82 64.6
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.2e-16 91.7 91 58.2
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.4e-16 90.1 85 57.6
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.0e-06 57.0 47 51.1


User provided reference genes

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