Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 0.0e+00 1169.1 618 100.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 7.2e-262 907.1 603 82.8
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 8.5e-170 601.3 419 79.7
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 7.5e-134 481.9 418 67.2
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 1.7e-85 321.2 616 38.6
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 9.3e-84 315.5 582 39.3
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 2.7e-83 313.9 616 40.3
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 4.3e-81 306.6 595 40.5
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 1.3e-77 295.0 595 37.6
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 7.9e-75 285.8 617 37.4
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 7.9e-75 285.8 607 37.2
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 3.3e-73 280.4 632 36.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 3.3e-73 280.4 610 36.9
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 4.3e-73 280.0 638 36.8
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 1.3e-72 278.5 601 37.4
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.8e-71 274.6 576 36.1
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.8e-71 274.6 597 38.2
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 2.4e-71 274.2 628 36.3
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 3.1e-71 273.9 629 36.4
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 6.9e-71 272.7 606 37.3
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 2.6e-70 270.8 607 37.7
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 1.0e-69 268.9 568 37.5
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 4.9e-69 266.5 593 36.1
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.9e-69 266.5 593 36.1
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 1.9e-68 264.6 584 35.8
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.9e-68 264.6 593 35.9
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.6e-67 261.5 674 34.0
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 3.5e-67 260.4 621 34.9
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 6.7e-66 256.1 661 35.2
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 9.7e-65 252.3 618 35.6
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.8e-64 250.8 606 36.5
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 1.5e-62 245.0 611 34.5
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.0e-61 242.3 418 40.4
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 1.3e-61 241.9 616 36.2
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 1.7e-61 241.5 656 33.8
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 1.1e-60 238.8 707 33.1
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 1.4e-60 238.4 577 35.9
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 1.4e-60 238.4 700 32.3
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 2.5e-60 237.7 601 34.1
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.5e-60 237.7 616 35.2
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 4.2e-60 236.9 643 33.9
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 6.7e-58 229.6 597 33.8
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 3.3e-57 227.3 609 33.7
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 2.8e-56 224.2 654 31.7
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 3.7e-56 223.8 579 34.5
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 6.3e-56 223.0 681 32.3
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 1.4e-55 221.9 734 30.4
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 6.9e-55 219.5 604 33.6
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 2.6e-54 217.6 597 33.8
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 5.9e-54 216.5 626 33.9
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 2.9e-53 214.2 642 33.6
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 1.1e-52 212.2 597 32.7
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.5e-52 211.1 734 30.9
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 3.2e-52 210.7 618 33.8
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 4.2e-52 210.3 532 35.0
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 4.2e-52 210.3 633 32.1
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 5.5e-52 209.9 617 32.4
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 7.2e-52 209.5 561 35.5
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.0e-50 205.7 510 35.3
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 8.8e-50 202.6 567 34.0
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 8.8e-50 202.6 566 33.2
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 2.0e-49 201.4 549 33.0
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 2.6e-49 201.1 575 34.1
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.4e-47 195.3 563 33.2
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 1.5e-46 191.8 573 34.6
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 2.0e-46 191.4 598 30.9
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 4.5e-46 190.3 590 31.7
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 5.9e-46 189.9 597 32.2
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 4.2e-44 183.7 508 34.1
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 5.5e-44 183.3 613 31.0
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 9.4e-44 182.6 593 33.2
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 3.6e-43 180.6 470 33.4
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 1.4e-42 178.7 567 33.5
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 1.4e-42 178.7 567 33.5
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 1.4e-42 178.7 567 33.5
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 2.3e-42 177.9 567 32.3
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 1.1e-41 175.6 566 32.3
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 9.7e-41 172.6 579 30.6
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 8.2e-40 169.5 644 30.4
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 2.4e-39 167.9 632 30.2
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 3.1e-39 167.5 279 40.9
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 4.1e-39 167.2 597 30.8
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 9.1e-39 166.0 571 31.2
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 4.5e-38 163.7 606 30.5
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 7.7e-38 162.9 581 30.5
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 2.2e-37 161.4 586 31.4
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 4.8e-32 143.7 198 46.0
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 1.2e-30 139.0 180 45.6
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 2.7e-30 137.9 606 29.2
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.2e-29 134.8 125 54.4
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 1.5e-28 132.1 589 27.3
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 1.0e-26 125.9 190 41.1
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 2.0e-25 121.7 720 26.8
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 5.7e-25 120.2 531 27.1
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 6.3e-24 116.7 144 41.0
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 5.4e-23 113.6 395 30.1
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 9.1e-23 112.8 108 53.7
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 2.7e-22 111.3 108 52.8
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 2.9e-21 107.8 710 26.3
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 5.0e-21 107.1 360 33.1
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 5.2e-18 97.1 432 29.9
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 2.7e-14 84.7 328 29.6
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 6.6e-13 80.1 181 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 1.1e-12 79.3 212 29.2
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 2.8e-11 74.7 602 25.6
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 3.6e-11 74.3 166 26.5
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 8.0e-11 73.2 166 28.9
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.0e-11 73.2 166 28.9
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 8.0e-11 73.2 112 33.9
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 8.0e-11 73.2 113 34.5
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 8.0e-11 73.2 133 32.3
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 1.4e-10 72.4 136 30.1
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.8e-10 72.0 166 28.3
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 2.3e-10 71.6 167 26.9
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 3.1e-10 71.2 166 28.3
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 4.0e-10 70.9 166 28.3
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 4.0e-10 70.9 166 28.3
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 6.8e-10 70.1 167 25.7
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 6.8e-10 70.1 154 31.2
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 8.9e-10 69.7 167 26.3
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 8.9e-10 69.7 167 26.3
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 1.2e-09 69.3 167 25.7
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 1.2e-09 69.3 166 28.9
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.2e-09 69.3 107 34.6
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 1.5e-09 68.9 168 29.8
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.0e-09 68.6 166 26.5
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.0e-09 68.6 166 25.9
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 2.0e-09 68.6 134 32.1
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 2.0e-09 68.6 166 27.7
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 2.6e-09 68.2 154 30.5
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 2.6e-09 68.2 166 27.7
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 2.6e-09 68.2 324 27.8
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 3.4e-09 67.8 184 29.9
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 4.4e-09 67.4 250 25.6
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 4.4e-09 67.4 453 27.2
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 5.8e-09 67.0 154 29.9
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 7.5e-09 66.6 166 28.3
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 9.8e-09 66.2 166 28.3
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 9.8e-09 66.2 166 26.5
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 1.7e-08 65.5 232 33.6
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 1.7e-08 65.5 151 27.2
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 2.2e-08 65.1 323 24.8
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 2.2e-08 65.1 318 25.2
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.9e-08 64.7 317 24.0
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 2.9e-08 64.7 166 27.7
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 3.7e-08 64.3 317 23.3
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 3.7e-08 64.3 317 23.3
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 3.7e-08 64.3 103 32.0
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 3.7e-08 64.3 313 25.2
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 3.7e-08 64.3 155 31.0
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 4.9e-08 63.9 411 22.6
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 4.9e-08 63.9 322 25.5
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 6.4e-08 63.5 348 24.4
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 1.1e-07 62.8 323 24.5
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 1.1e-07 62.8 290 26.2
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 1.9e-07 62.0 168 25.0
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 4.1e-07 60.8 169 27.8
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 4.1e-07 60.8 447 23.9
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 4.1e-07 60.8 289 24.9
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 5.4e-07 60.5 435 20.9
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 5.4e-07 60.5 407 22.6
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 7.0e-07 60.1 315 25.1
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 9.2e-07 59.7 429 23.3
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 1.2e-06 59.3 427 23.9
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 1.6e-06 58.9 166 25.3
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-06 58.9 433 21.7
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 1.6e-06 58.9 316 25.3
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 2.0e-06 58.5 323 26.9
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 2.7e-06 58.2 413 23.2
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 3.5e-06 57.8 421 23.0
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 4.6e-06 57.4 289 22.5
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 4.6e-06 57.4 467 22.5
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 7.8e-06 56.6 439 21.9
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 7.8e-06 56.6 439 21.9


User provided reference genes

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