Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G004600 Citrullus lanatus HOM05D007370 ORTHO05D009394 6.3e-202 707.2 354 100.0
CsaV3_6G022350 Cucumis sativus L. HOM05D007370 ORTHO05D009394 2.3e-143 512.7 451 65.2
Sed0008389 Sechium edule HOM05D007370 ORTHO05D009394 2.6e-139 499.2 455 62.9
Haze_01298 Corylus avellana HOM05D007370 ORTHO05D009394 4.5e-107 392.1 424 54.5
Dinv15168 Davidia involucrata HOM05D007370 ORTHO05D009394 7.1e-105 384.8 438 50.9
CiPaw.01G138600 Carya illinoinensis HOM05D007370 ORTHO05D009394 9.3e-105 384.4 444 51.4
Rhsim02G0003800 Rhododendron simsii HOM05D007370 ORTHO05D009394 1.8e-100 370.2 453 49.2
MELO3C021271.2 Cucumis melo HOM05D007370 ORTHO05D009394 5.3e-100 368.6 334 63.2
Prupe.1G117500 Prunus persica HOM05D007370 ORTHO05D009394 1.7e-98 363.6 444 48.4
Atru.chr4.3000 Acer truncatum HOM05D007370 ORTHO05D009394 1.2e-96 357.5 448 48.4
Potri.010G145700 Populus trichocarpa HOM05D007370 ORTHO05D009394 1.6e-96 357.1 449 48.6
Eucgr.A00294 Eucalyptus grandis HOM05D007370 ORTHO05D009394 2.1e-96 356.7 442 48.9
Thecc.04G300700 Theobroma cacao HOM05D007370 ORTHO05D009394 2.1e-96 356.7 441 49.0
TAR362G0601 Trochodendron aralioides HOM05D007370 ORTHO05D009394 1.4e-95 354.0 436 49.1
DCAR_002511 Daucus carota HOM05D007370 ORTHO05D009394 2.3e-95 353.2 435 48.0
Duzib052G0732 Durio zibethinus HOM05D007370 ORTHO05D009394 3.9e-95 352.4 442 48.2
PGR142G3192 Punica granatum HOM05D007370 ORTHO05D009394 5.1e-95 352.1 436 48.9
Cc03_g00820 Coffea canephora HOM05D007370 ORTHO05D009394 1.9e-94 350.1 433 48.5
COL.COLO4_34615 Corchorus olitorius HOM05D007370 ORTHO05D009394 1.9e-94 350.1 444 48.2
Manes.15G004200 Manihot esculenta HOM05D007370 ORTHO05D009394 3.3e-94 349.4 446 48.0
Lj6g0027049 Lotus japonicus HOM05D007370 ORTHO05D009394 7.4e-94 348.2 444 49.1
Sopen12g033950 Solanum pennellii HOM05D007370 ORTHO05D009394 9.7e-94 347.8 426 46.9
FvH4_4g19730 Fragaria vesca HOM05D007370 ORTHO05D009394 1.3e-93 347.4 443 48.8
Migut.G00060 Erythranthe guttata HOM05D007370 ORTHO05D009394 1.7e-93 347.1 432 47.7
RcHm_v2.0_Chr4g0425231 Rosa chinensis HOM05D007370 ORTHO05D009394 2.8e-93 346.3 441 48.8
FAN07G1244 Fragaria x ananassa HOM05D007370 ORTHO05D009394 4.8e-93 345.5 446 48.0
Nn6g33643 Nelumbo nucifera HOM05D007370 ORTHO05D009394 1.8e-92 343.6 437 49.0
Glyma.09G035700 Glycine max HOM05D007370 ORTHO05D009394 3.1e-92 342.8 442 47.7
Gohir.A01G034400 Gossypium hirsutum HOM05D007370 ORTHO05D009394 1.2e-91 340.9 448 46.2
VMungo0540G1057 Vigna mungo HOM05D007370 ORTHO05D009394 3.4e-91 339.3 425 49.6
Phvul.006G118000 Phaseolus vulgaris HOM05D007370 ORTHO05D009394 5.9e-91 338.6 426 48.6
Solyc12g099270.2 Solanum lycopersicum HOM05D007370 ORTHO05D009394 5.9e-91 338.6 427 46.6
MBI18_g37561_MAGBIO Magnolia biondii HOM05D007370 ORTHO05D009394 1.7e-90 337.0 458 46.1
Gorai.002G030100 Gossypium raimondii HOM05D007370 ORTHO05D009394 4.2e-89 332.4 470 44.3
Sc13g0006460 Simmondsia chinensis HOM05D007370 ORTHO05D009394 7.2e-89 331.6 442 45.0
PGSC0003DMG400004697 Solanum tuberosum HOM05D007370 ORTHO05D009394 7.2e-89 331.6 426 45.5
Medtr2g034140 Medicago truncatula HOM05D007370 ORTHO05D009394 2.7e-88 329.7 419 48.9
TPR.G27253 Trifolium pratense HOM05D007370 ORTHO05D009394 3.6e-88 329.3 436 48.2
HanXRQChr01g0030981 Helianthus annuus HOM05D007370 ORTHO05D009394 1.4e-87 327.4 423 47.3
arahy.Tifrunner.gnm1.ann1.VHF2FI Arachis hypogaea HOM05D007370 ORTHO05D009394 2.3e-87 326.6 420 48.1
CAN.G484.61 Capsicum annuum HOM05D007370 ORTHO05D009394 3.9e-87 325.9 426 45.5
MD16G1154200 Malus domestica HOM05D007370 ORTHO05D009394 6.7e-87 325.1 444 45.9
Lj6A691G74 Lonicera japonica HOM05D007370 ORTHO05D009394 2.6e-86 323.2 455 44.6
arahy.Tifrunner.gnm1.ann1.HMTG6S Arachis hypogaea HOM05D007370 ORTHO05D009394 1.3e-85 320.9 423 48.0
ECA248G2723 Erigeron canadensis HOM05D007370 ORTHO05D009394 1.7e-85 320.5 432 45.8
Psat1g161680 Pisum sativum HOM05D007370 ORTHO05D009394 2.2e-85 320.1 442 45.5
QL06p012270 Quercus lobata HOM05D007370 ORTHO05D009394 2.2e-85 320.1 409 48.4
EL10Ac3g05507 Beta vulgaris HOM05D007370 ORTHO05D009394 3.7e-85 319.3 431 45.5
arahy.Tifrunner.gnm1.ann1.DXY8A4 Arachis hypogaea HOM05D007370 ORTHO05D009394 1.8e-84 317.0 453 44.6
Lalb_Chr20g0120861 Lupinus albus HOM05D007370 ORTHO05D009394 1.2e-83 314.3 430 46.7
SalBow8G4515 Salvia bowleyana HOM05D007370 ORTHO05D009394 2.6e-83 313.2 413 45.3
Hund11933 Selenicereus undatus HOM05D007370 ORTHO05D009394 1.7e-82 310.5 418 46.2
Nitab4.5_0002150g0160 Nicotiana tabacum HOM05D007370 ORTHO05D009394 1.9e-81 307.0 419 44.4
ATR0693G166 Amborella trichopoda HOM05D007370 ORTHO05D009394 2.1e-80 303.5 413 43.8
Peaxi162Scf00120g00023 Petunia axillaris HOM05D007370 ORTHO05D009394 2.1e-80 303.5 398 45.2
Nitab4.5_0002294g0020 Nicotiana tabacum HOM05D007370 ORTHO05D009394 2.7e-80 303.1 419 43.4
unitig_37.g12412 Utricularia gibba HOM05D007370 ORTHO05D009394 4.7e-80 302.4 417 43.2
AUR62039281 Chenopodium quinoa HOM05D007370 ORTHO05D009394 6.1e-80 302.0 433 43.6
FAN12G3716 Fragaria x ananassa HOM05D007370 ORTHO05D009394 2.0e-78 297.0 401 48.9
CDE08G1199 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 5.7e-78 295.4 423 43.3
AUR62016207 Chenopodium quinoa HOM05D007370 ORTHO05D009394 1.1e-76 291.2 411 43.6
TWI09G1560 Tripterygium wilfordii HOM05D007370 ORTHO05D009394 4.1e-76 289.3 425 43.3
Zm00001eb356360 Zea mays HOM05D007370 ORTHO05D009394 5.9e-75 285.4 396 44.4
Sabra10G0112300 Salix brachista HOM05D007370 ORTHO05D009394 2.9e-74 283.1 346 49.1
Ah.04g156700 Amaranthus hybridus HOM05D007370 ORTHO05D009394 4.2e-73 279.3 411 44.0
CSS0048431 Camellia sinensis var. sinensis HOM05D007370 ORTHO05D009394 6.3e-69 265.4 326 48.2
SEGI_11896 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 1.1e-68 264.6 435 38.6
Os05g0157300 Oryza sativa ssp. japonica HOM05D007370 ORTHO05D009394 1.2e-67 261.2 401 41.9
Gohir.D01G023538 Gossypium hirsutum HOM05D007370 ORTHO05D009394 4.0e-63 246.1 327 45.9
vmacro15182 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 5.7e-62 242.3 307 46.3
Lsat_1_v5_gn_1_41060 Lactuca sativa HOM05D007370 ORTHO05D009394 7.5e-62 241.9 352 44.3
arahy.Tifrunner.gnm1.ann1.CV4FMG Arachis hypogaea HOM05D007370 ORTHO05D009394 7.7e-59 231.9 360 42.8
Cpa.g.sc9.57 Carica papaya HOM05D007370 ORTHO05D009394 7.7e-59 231.9 312 45.8
Peaxi162Scf01160g00001 Petunia axillaris HOM05D007370 ORTHO05D009394 1.8e-52 210.7 376 38.0
Pp3c14_3570 Physcomitrium patens HOM05D007370 ORTHO05D009394 1.2e-51 208.0 439 35.8
SMO145G0205 Selaginella moellendorffii HOM05D007370 ORTHO05D009394 1.8e-47 194.1 342 38.3
AagrBONN_evm.TU.Sc2ySwM_228.2788 Anthoceros agrestis HOM05D007370 ORTHO05D009394 2.3e-47 193.7 346 36.4
CBR_g50285 Chara braunii HOM05D007370 ORTHO05D009394 2.4e-44 183.7 396 32.6
Mapoly0007s0102 Marchantia polymorpha HOM05D007370 ORTHO05D009394 3.0e-42 176.8 321 35.2
Eucgr.A00046 Eucalyptus grandis HOM05D007370 ORTHO05D009394 6.6e-42 175.6 127 68.5
Ca_03237_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 5.8e-38 162.5 175 53.7
Mapoly0007s0137 Marchantia polymorpha HOM05D007370 ORTHO05D009394 1.6e-35 154.5 356 33.1
Ca_00981_v3 Cicer arietinum L. HOM05D007370 ORTHO05D009394 2.5e-33 147.1 156 59.0
SGA_v2.0_scaffold104G30077 Striga asiatica HOM05D007370 ORTHO05D009394 8.1e-32 142.1 277 35.7
vmacro15183 Vaccinium macrocarpon HOM05D007370 ORTHO05D009394 2.1e-27 127.5 134 54.5
Hund11975 Selenicereus undatus HOM05D007370 ORTHO05D009394 7.8e-27 125.6 218 39.0
HPP92_027782 Vanilla planifolia HOM05D007370 ORTHO05D009394 7.8e-27 125.6 257 37.7
Oeu001173.1 Olea europaea HOM05D007370 ORTHO05D009394 1.9e-25 120.9 148 47.3
GSVIVG01034991001 Vitis vinifera HOM05D007370 ORTHO05D009394 3.4e-22 110.2 184 39.1
MD13G1153900 Malus domestica HOM05D007370 ORTHO05D009394 1.3e-18 98.2 83 61.4
Glyma.18G184250 Glycine max HOM05D007370 ORTHO05D009394 3.3e-17 93.6 72 62.5
CDE02G4406 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 4.3e-17 93.2 101 49.5
Glyma.15G140501 Glycine max HOM05D007370 ORTHO05D009394 2.8e-16 90.5 154 37.0
arahy.Tifrunner.gnm1.ann1.Y96K7L Arachis hypogaea HOM05D007370 ORTHO05D009394 8.1e-16 89.0 45 80.0
HPP92_027781 Vanilla planifolia HOM05D007370 ORTHO05D009394 1.5e-14 84.7 129 38.8
Mapoly0007s0289 Marchantia polymorpha HOM05D007370 ORTHO05D009394 3.4e-14 83.6 152 37.5
Mapoly0252s0002 Marchantia polymorpha HOM05D007370 ORTHO05D009394 3.4e-14 83.6 152 37.5
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-13 81.3 60 71.7
Actinidia14258 Actinidia chinensis HOM05D001648 ORTHO05D001657 6.4e-13 79.3 90 46.7
FAN12G2956 Fragaria x ananassa HOM05D007370 ORTHO05D009394 5.1e-10 69.7 61 62.3
CDE02G2864 Ceratophyllum demersum HOM05D007370 ORTHO05D009394 8.7e-10 68.9 112 42.9
QL06p020122 Quercus lobata HOM05D007370 ORTHO05D009394 1.1e-09 68.6 60 61.7
Potri.008G105401 Populus trichocarpa HOM05D007370 ORTHO05D009394 2.0e-06 57.8 61 55.7
SEGI_23244 Sequoiadendron giganteum HOM05D007370 ORTHO05D009394 2.0e-06 57.8 61 49.2


User provided reference genes

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