Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.7e-101 372.1 196 100.0
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 3.4e-48 195.7 127 86.6
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 4.4e-48 195.3 128 85.9
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.4e-46 189.5 127 84.3
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.7e-44 183.3 127 81.9
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 3.9e-44 182.2 127 80.3
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 8.7e-44 181.0 127 80.3
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 1.5e-43 180.3 127 79.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.5e-43 180.3 125 80.8
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 1.9e-43 179.9 127 79.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 1.9e-43 179.9 127 80.3
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.9e-43 179.9 127 79.5
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 2.5e-43 179.5 127 79.5
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 2.5e-43 179.5 127 78.7
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 3.3e-43 179.1 127 79.5
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 3.3e-43 179.1 127 78.7
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 5.6e-43 178.3 127 78.7
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 5.6e-43 178.3 127 78.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 1.6e-42 176.8 127 78.7
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.8e-42 176.0 127 77.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.8e-42 176.0 127 77.2
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 8.1e-42 174.5 127 78.7
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.1e-41 174.1 124 79.0
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 1.4e-41 173.7 128 78.9
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.8e-41 173.3 127 76.4
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.4e-41 172.9 127 76.4
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 3.1e-41 172.6 127 76.4
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.0e-41 172.2 127 78.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 4.0e-41 172.2 127 78.0
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 6.9e-41 171.4 127 78.0
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.2e-40 170.6 128 76.6
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 1.2e-40 170.6 124 78.2
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.5e-40 170.2 127 78.0
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.6e-40 169.5 128 76.6
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 2.6e-40 169.5 127 76.4
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.6e-40 169.5 128 77.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 3.4e-40 169.1 126 77.8
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.4e-40 169.1 125 77.6
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 76.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 76.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 76.4
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 77.2
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 77.2
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.5e-40 168.7 127 77.2
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 4.5e-40 168.7 125 76.8
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 5.8e-40 168.3 125 76.8
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 7.6e-40 167.9 127 73.2
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 7.6e-40 167.9 127 75.6
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 7.6e-40 167.9 128 76.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 7.6e-40 167.9 124 76.6
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 9.9e-40 167.5 127 76.4
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 9.9e-40 167.5 128 76.6
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.7e-39 166.8 127 74.0
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.7e-39 166.8 127 75.6
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.2e-39 166.4 149 66.4
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.9e-39 166.0 125 77.6
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.9e-39 166.0 128 75.8
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.9e-39 166.0 127 76.4
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 3.8e-39 165.6 126 74.6
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.8e-39 165.6 127 75.6
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.8e-39 165.6 127 76.4
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 4.9e-39 165.2 125 76.8
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 6.4e-39 164.9 127 74.0
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 6.4e-39 164.9 127 75.6
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.1e-38 164.1 128 75.8
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.4e-38 163.7 125 75.2
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.2e-38 162.5 128 75.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 9.3e-38 161.0 124 74.2
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.2e-37 160.6 132 67.4
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 2.1e-37 159.8 128 74.2
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.7e-37 159.5 127 73.2
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.6e-37 158.7 127 73.2
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 4.6e-37 158.7 127 73.2
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.6e-37 158.7 128 71.9
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.6e-37 158.7 128 71.9
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 4.6e-37 158.7 127 71.7
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 4.6e-37 158.7 127 71.7
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.0e-36 157.5 127 74.0
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 1.8e-36 156.8 115 78.3
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 3.9e-36 155.6 125 71.2
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.9e-36 155.6 125 71.2
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 3.9e-36 155.6 125 71.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 3.9e-36 155.6 125 71.2
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 5.1e-36 155.2 119 72.3
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 5.1e-36 155.2 131 71.8
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.5e-35 153.7 127 70.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.5e-35 153.7 128 69.5
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.9e-35 153.3 127 70.9
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.5e-35 152.9 127 72.4
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.5e-35 152.9 177 56.5
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 9.6e-35 151.0 127 71.7
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 9.6e-35 151.0 128 68.8
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.3e-34 150.6 116 72.4
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.8e-34 148.7 127 68.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 6.2e-34 148.3 128 69.5
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 8.1e-34 147.9 127 69.3
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 1.8e-33 146.7 126 69.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.0e-33 145.6 126 69.0
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 5.3e-33 145.2 123 69.9
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.9e-33 144.8 127 66.9
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 6.9e-33 144.8 126 68.3
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 6.9e-33 144.8 123 68.3
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.2e-32 144.1 115 72.2
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-32 144.1 127 66.9
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.5e-32 143.7 126 67.5
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.6e-32 142.9 123 68.3
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.6e-32 142.9 123 68.3
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 4.5e-32 142.1 128 64.1
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 7.6e-32 141.4 126 66.7
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 9.9e-32 141.0 123 67.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 9.9e-32 141.0 123 67.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 9.9e-32 141.0 123 67.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 9.9e-32 141.0 123 67.5
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 9.9e-32 141.0 119 69.7
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 9.9e-32 141.0 124 68.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 1.3e-31 140.6 126 66.7
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.7e-31 140.2 128 65.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 8.4e-31 137.9 123 66.7
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 8.4e-31 137.9 127 63.8
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.9e-30 136.7 123 65.9
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 1.2e-29 134.0 113 68.1
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 1.2e-29 134.0 128 66.4
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.5e-29 132.5 127 62.2
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.8e-28 130.2 121 61.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.0e-28 129.4 127 61.4
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.9e-27 126.7 114 67.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.3e-27 125.9 136 57.4
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 9.6e-27 124.4 124 62.1
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.3e-25 118.6 101 67.3
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.0e-24 116.7 127 57.5
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 3.4e-24 115.9 99 69.7
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 4.5e-24 115.5 112 58.9
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.3e-20 103.2 123 52.8
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.3e-20 103.2 62 85.5
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.3e-19 99.4 84 72.6
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.4e-17 94.0 75 69.3
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 4.5e-16 89.0 57 78.9
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 5.9e-16 88.6 52 90.4
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.7e-15 87.0 50 92.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.2e-15 86.7 65 72.3
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.9e-12 75.9 59 71.2
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 3.9e-12 75.9 78 60.3
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.1e-11 74.3 57 70.2
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 4.8e-10 68.9 50 78.0


User provided reference genes

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