Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 0.0e+00 2152.1 1080 100.0
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 0.0e+00 1969.5 1090 91.8
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 0.0e+00 1941.4 1100 89.9
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 0.0e+00 1848.6 1214 81.3
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 0.0e+00 1727.6 1088 81.2
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 0.0e+00 1723.4 1087 80.6
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 0.0e+00 1718.7 1087 79.9
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 0.0e+00 1718.0 1088 80.5
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 0.0e+00 1718.0 1087 80.3
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 0.0e+00 1713.4 1085 79.6
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1713.0 1086 80.8
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 0.0e+00 1712.6 1089 80.5
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 0.0e+00 1710.7 1091 80.1
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 0.0e+00 1708.3 1086 80.5
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 0.0e+00 1708.0 1092 79.5
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1704.1 1086 80.3
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1703.7 1089 79.5
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 0.0e+00 1701.4 1086 78.9
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 0.0e+00 1696.8 1121 77.4
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1696.0 1088 79.3
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1694.9 1087 79.1
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1694.5 1086 79.9
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 0.0e+00 1692.9 1086 79.5
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1689.5 1089 78.8
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1689.5 1119 78.1
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1688.3 1087 78.7
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 0.0e+00 1687.5 1087 79.0
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 0.0e+00 1685.6 1090 78.7
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1683.7 1071 79.9
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1677.9 1087 78.6
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 0.0e+00 1677.5 1088 78.6
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1677.1 1087 78.1
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1676.0 1087 78.4
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1675.2 1087 78.6
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1673.3 1085 79.3
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 0.0e+00 1672.5 1086 78.0
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1671.4 1086 78.0
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1671.4 1093 78.0
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1671.4 1090 77.7
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 0.0e+00 1668.7 1087 78.3
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 0.0e+00 1665.6 1114 76.4
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 0.0e+00 1664.4 1087 78.3
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 0.0e+00 1662.5 1086 77.5
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1662.1 1091 77.5
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 0.0e+00 1660.2 1091 76.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1657.9 1092 78.1
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1657.1 1092 77.9
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 0.0e+00 1657.1 1094 77.1
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1656.7 1086 77.4
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 0.0e+00 1655.6 1087 77.2
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 0.0e+00 1654.4 1087 77.5
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1654.4 1088 77.5
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1648.3 1092 77.6
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 0.0e+00 1644.8 1092 77.5
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 0.0e+00 1639.4 1090 76.2
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1632.1 1097 75.7
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 0.0e+00 1628.6 1087 75.1
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 0.0e+00 1628.2 1087 75.0
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1627.8 1096 75.5
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 0.0e+00 1627.1 1096 75.3
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 0.0e+00 1626.7 1089 76.7
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 0.0e+00 1623.6 1191 71.4
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 0.0e+00 1622.8 1091 75.8
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 0.0e+00 1620.9 1093 75.3
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 0.0e+00 1620.5 1098 76.3
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1619.4 1087 76.5
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1617.8 1089 75.1
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 0.0e+00 1614.7 1090 76.5
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1612.0 1042 79.0
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 0.0e+00 1611.3 1091 75.6
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 0.0e+00 1608.2 1069 77.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 0.0e+00 1607.8 1086 75.1
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 0.0e+00 1607.8 1095 75.1
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 0.0e+00 1605.9 1096 74.7
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 0.0e+00 1605.1 1091 74.8
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 0.0e+00 1604.7 1091 74.7
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 0.0e+00 1604.0 1091 74.9
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 0.0e+00 1602.4 1095 74.8
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 0.0e+00 1602.0 1095 74.4
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1601.6 1095 74.7
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1599.3 1095 74.6
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1599.3 1095 74.6
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 0.0e+00 1599.3 1095 74.6
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 0.0e+00 1593.6 1131 72.3
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 0.0e+00 1590.5 1089 74.4
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 0.0e+00 1588.5 1088 73.4
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 0.0e+00 1583.2 1091 74.3
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 0.0e+00 1581.6 1091 74.2
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 0.0e+00 1581.2 1106 73.2
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 0.0e+00 1566.2 1090 73.5
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1560.0 1086 72.1
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 0.0e+00 1555.4 1090 72.0
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 0.0e+00 1551.6 1091 73.6
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 0.0e+00 1519.2 1058 73.9
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 0.0e+00 1505.0 1091 72.0
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 0.0e+00 1503.4 1086 70.3
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 0.0e+00 1500.0 1060 71.6
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 0.0e+00 1495.3 1084 69.9
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 0.0e+00 1492.6 1039 72.8
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 0.0e+00 1437.6 1083 70.5
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 0.0e+00 1413.3 978 74.4
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 0.0e+00 1408.7 973 75.3
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 0.0e+00 1392.5 962 73.5
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 0.0e+00 1364.7 1512 52.4
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 0.0e+00 1362.1 970 72.5
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 0.0e+00 1351.7 1086 63.3
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 0.0e+00 1320.8 861 78.0
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1288.5 1084 61.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 0.0e+00 1288.5 1088 61.1
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 0.0e+00 1274.2 837 78.5
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 0.0e+00 1249.6 1086 59.9
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 0.0e+00 1227.6 902 71.0
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 0.0e+00 1154.0 797 73.9
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 0.0e+00 1140.2 966 61.6
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1117.4 1053 58.2
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 0.0e+00 1089.7 1056 57.1
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 1.1e-305 1053.5 1001 58.2
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 1.5e-299 1033.1 908 61.3
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.9e-289 999.6 778 67.2
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 3.2e-281 972.2 654 76.5
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.4e-220 770.8 537 72.8
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.9e-215 751.5 544 71.7
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 2.0e-182 644.0 548 63.3
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 4.8e-176 622.9 662 51.4
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.0e-174 617.5 545 61.7
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 3.5e-171 606.7 449 69.5
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 7.9e-163 578.9 368 77.4
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 2.8e-160 570.5 1034 39.4
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 3.4e-150 537.0 1212 32.2
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.0e-117 429.1 314 70.7
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 2.3e-106 391.3 266 73.3
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 9.2e-103 379.4 419 53.2
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 1.3e-101 375.6 306 62.7
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 6.1e-99 366.7 206 86.9
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 4.7e-91 340.5 206 79.1
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 3.5e-86 324.3 183 83.6
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 8.1e-83 313.2 198 77.8
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 5.8e-81 307.0 340 50.3
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 6.4e-80 303.5 176 81.2
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 6.9e-58 230.3 442 37.1
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 1.4e-55 222.6 137 75.2
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 8.7e-53 213.4 181 62.4
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.8e-51 207.6 127 75.6
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 1.4e-50 206.1 122 81.1
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.9e-47 195.7 133 71.4
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.6e-41 175.3 132 59.8
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 1.7e-40 172.6 452 31.9
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 2.9e-40 171.8 446 32.1
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 2.1e-38 165.6 441 31.7
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.0e-29 136.7 108 65.7
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.0e-29 136.7 108 65.7
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.0e-29 136.7 108 65.7
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 4.3e-28 131.3 91 69.2
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 1.7e-27 129.4 81 75.3
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.8e-26 125.9 94 61.7
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.5e-23 115.5 76 69.7
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 7.2e-23 114.0 73 71.2
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.2e-22 113.2 73 71.2
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.7e-22 112.1 76 67.1
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 6.1e-22 110.9 76 67.1
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 1.0e-21 110.2 78 67.9
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.7e-19 102.8 142 47.2
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 4.8e-19 101.3 71 67.6
Lju1669C0T7 Lonicera japonica HOM05D003479 ORTHO05D004659 7.7e-17 94.0 48 89.6
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 5.5e-15 87.8 93 55.9
FAN14G2177 Fragaria x ananassa HOM05D003479 ORTHO05D015055 8.8e-13 80.5 44 84.1
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 3.3e-12 78.6 63 68.3
RcHm_v2.0_Chr3g0485471 Rosa chinensis HOM05D003479 ORTHO05D004659 4.4e-12 78.2 43 81.4
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 1.1e-10 73.6 70 54.3
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 9.1e-10 70.5 123 38.2
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 5.9e-09 67.8 71 53.5
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.2e-08 65.9 48 64.6
Sed0003575 Sechium edule HOM05D003479 ORTHO05D019150 2.2e-08 65.9 156 30.8
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 8.0e-06 57.4 34 70.6


User provided reference genes

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