Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 3.0e-140 501.9 269 100.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 5.4e-137 491.1 270 91.1
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.6e-136 489.6 269 97.4
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.1e-133 479.2 269 87.4
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 2.1e-125 452.6 269 81.4
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.4e-124 449.9 269 81.8
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 3.4e-123 445.3 269 81.4
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 7.5e-123 444.1 268 80.2
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 7.5e-123 444.1 269 80.3
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.8e-123 443.7 269 79.9
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.3e-122 443.4 269 79.9
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 79.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.2e-122 442.6 269 79.9
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 3.7e-122 441.8 269 81.0
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 4.9e-122 441.4 269 81.0
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 8.3e-122 440.7 269 80.7
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 86.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 79.9
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 79.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.9e-121 439.5 263 81.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 79.9
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-121 438.0 275 78.5
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 7.1e-121 437.6 269 83.6
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-121 437.6 275 78.2
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-120 436.8 269 78.4
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-120 436.0 275 78.2
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 78.8
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-120 435.6 269 78.8
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 2.7e-120 435.6 268 79.9
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 78.4
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 3.5e-120 435.3 269 79.2
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 78.1
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.0e-120 434.5 269 78.1
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 6.0e-120 434.5 269 78.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 7.8e-120 434.1 269 79.2
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 7.8e-120 434.1 269 79.9
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 7.8e-120 434.1 269 78.4
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.0e-119 433.7 271 77.9
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.0e-119 433.7 270 78.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.0e-119 433.7 269 79.2
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 78.8
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.3e-119 433.3 269 78.8
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-119 433.0 269 79.2
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.9e-119 431.8 269 77.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 3.9e-119 431.8 269 77.7
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 5.1e-119 431.4 269 78.1
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 6.6e-119 431.0 267 78.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 6.6e-119 431.0 266 78.2
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.5e-118 429.9 269 77.3
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.9e-118 429.5 269 78.1
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.9e-118 429.5 269 85.5
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.5e-118 429.1 269 77.3
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 77.3
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 3.3e-118 428.7 269 77.7
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.3e-118 428.3 271 77.5
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.3e-118 428.3 269 78.1
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 4.3e-118 428.3 270 77.0
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 9.5e-118 427.2 271 76.8
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 9.5e-118 427.2 269 84.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 76.6
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 77.3
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 77.0
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 78.1
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.1e-117 426.0 269 83.3
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.1e-117 426.0 269 77.0
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 78.4
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 3.6e-117 425.2 270 77.4
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 3.6e-117 425.2 269 82.5
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 4.7e-117 424.9 269 77.3
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 4.7e-117 424.9 269 75.8
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 4.7e-117 424.9 269 84.0
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 6.2e-117 424.5 269 77.0
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 8.1e-117 424.1 274 77.0
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.1e-116 423.7 269 76.6
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.1e-116 423.7 269 74.7
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 76.6
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 76.6
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.8e-116 422.9 306 71.6
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.3e-116 422.5 269 84.4
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 3.1e-116 422.2 269 77.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.1e-116 422.2 269 75.8
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 4.0e-116 421.8 269 75.5
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 82.9
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 75.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 8.9e-116 420.6 270 76.7
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.9e-116 420.6 271 76.4
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.9e-116 420.6 269 77.0
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 76.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.5e-115 419.9 281 73.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.0e-115 419.5 270 76.7
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 83.6
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 7.6e-115 417.5 270 76.3
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 9.9e-115 417.2 267 75.7
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 74.0
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.9e-114 415.6 261 76.6
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.8e-114 415.2 269 78.8
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.8e-114 415.2 268 76.5
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 4.9e-114 414.8 269 74.7
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 74.0
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 74.3
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 3.2e-113 412.1 268 73.9
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 73.6
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.2e-112 410.2 286 72.4
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-112 409.1 269 74.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.3e-111 406.8 267 73.8
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 8.6e-111 404.1 269 74.7
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 6.2e-109 397.9 268 70.5
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.4e-108 396.7 269 70.6
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.4e-108 396.0 269 70.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.0e-108 395.2 267 71.9
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 8.9e-108 394.0 268 69.8
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 2.6e-107 392.5 269 74.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 7.6e-107 391.0 269 70.6
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.3e-106 390.2 269 72.5
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.8e-106 388.7 252 76.6
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 8.4e-106 387.5 275 72.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 2.4e-105 386.0 269 70.3
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 9.3e-105 384.0 244 77.5
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-104 383.3 271 76.0
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 3.5e-104 382.1 269 68.8
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.3e-103 379.4 266 69.5
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.6e-103 377.9 270 71.1
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 6.6e-103 377.9 235 84.3
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-102 377.1 270 71.1
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-102 377.1 271 68.6
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.6e-102 374.8 271 68.3
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-102 374.4 276 68.1
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 9.6e-102 374.0 269 71.7
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-101 372.9 271 67.9
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-101 371.7 276 68.1
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.1e-101 370.9 276 67.8
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 4.0e-100 368.6 269 67.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 9.9e-99 364.0 270 67.0
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 8.4e-98 360.9 236 73.3
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.1e-97 360.5 270 66.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.4e-97 360.1 269 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.9e-97 359.8 270 66.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 2.4e-97 359.4 271 70.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.7e-96 355.9 269 65.4
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.6e-96 355.1 267 64.4
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.9e-95 352.1 272 67.3
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 3.6e-93 345.5 212 80.2
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.8e-93 345.1 270 61.5
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.4e-92 343.6 270 62.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.5e-91 340.1 271 61.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.2e-83 313.9 211 73.0
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.9e-82 308.5 249 59.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.5e-81 306.2 197 77.7
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.1e-78 297.4 217 70.5
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.5e-78 297.0 295 53.6
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 6.3e-77 291.6 187 76.5
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-76 290.8 189 74.1
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.1e-70 270.8 269 51.3
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 3.7e-61 239.2 143 81.1
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 5.9e-51 205.3 189 56.6
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.6e-48 196.1 161 65.2
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 4.7e-48 195.7 168 64.9
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.0e-47 194.5 265 41.1
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.7e-47 191.8 133 69.9
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 3.1e-44 183.0 269 42.8
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.3e-42 177.6 267 38.6
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 8.5e-42 174.9 105 79.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 7.0e-36 155.2 88 84.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 9.1e-36 154.8 129 62.8
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.8e-34 149.4 82 86.6
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 5.2e-31 139.0 109 66.1
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 6.8e-31 138.7 77 84.4
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.0e-30 137.1 278 32.4
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-26 123.6 69 84.1
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 5.7e-22 109.0 108 52.8
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.2e-20 103.2 68 72.1
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.7e-13 79.7 66 57.6
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 2.3e-10 70.5 57 59.6
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 3.9e-10 69.7 57 57.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 3.9e-10 69.7 67 47.8
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 1.1e-07 61.6 50 60.0
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 2.3e-07 60.5 28 92.9
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 2.3e-07 60.5 28 92.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-06 58.2 82 39.0


User provided reference genes

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