Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 0.0e+00 1643.2 813 100.0
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 0.0e+00 1476.5 837 88.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 0.0e+00 1372.5 840 81.8
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 0.0e+00 1368.2 807 82.8
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 3.6e-301 1038.1 822 62.7
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 8.2e-298 1026.9 836 61.2
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.4e-297 1025.4 838 61.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.0e-295 1020.0 820 62.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 3.6e-285 984.9 844 58.9
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 7.0e-281 970.7 787 60.9
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.6e-280 969.5 837 58.1
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 8.0e-277 957.2 844 57.1
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.0e-275 952.6 836 58.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.7e-274 948.3 840 57.9
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 6.3e-274 947.6 822 59.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.3e-274 947.2 526 88.4
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.4e-273 946.4 845 57.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 9.2e-273 943.7 826 57.0
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.2e-273 943.7 835 59.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.3e-271 939.1 827 57.7
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.1e-270 936.8 798 59.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.3e-270 935.3 833 57.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.6e-269 932.9 833 57.1
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.7e-269 931.4 843 56.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 6.1e-269 931.0 797 58.3
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.3e-268 929.1 838 57.3
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.3e-268 929.1 849 55.9
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 8.9e-268 927.2 845 57.8
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.2e-267 926.8 877 54.6
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.2e-267 926.8 838 57.2
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 4.4e-267 924.9 836 56.7
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.8e-267 923.7 838 56.9
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 5.4e-265 917.9 829 55.7
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.6e-264 916.4 837 58.1
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.6e-264 916.4 825 56.6
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 4.6e-264 914.8 848 57.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.6e-264 914.8 840 55.2
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.9e-263 911.8 841 56.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.6e-261 905.2 838 56.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-260 903.7 845 56.2
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-260 902.9 845 56.1
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.9e-260 900.6 782 59.3
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.2e-258 896.0 841 55.2
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.4e-257 893.3 888 53.7
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.9e-257 892.9 783 59.1
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.9e-257 892.9 834 55.2
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.4e-257 892.5 838 53.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.4e-257 891.3 850 54.7
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 4.6e-256 888.3 755 59.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 7.8e-256 887.5 800 56.1
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.6e-255 884.4 833 55.0
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.3e-252 875.9 829 53.7
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.8e-252 874.4 783 57.5
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 6.8e-252 874.4 717 60.4
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.5e-251 873.2 845 54.0
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.5e-251 873.2 830 54.1
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.4e-249 866.7 775 56.1
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.4e-249 865.9 788 54.6
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 4.1e-249 865.1 755 58.1
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.0e-248 861.3 838 54.4
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.0e-248 861.3 850 53.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.6e-245 853.2 815 53.9
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 8.1e-245 850.9 839 53.6
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 2.0e-243 846.3 806 54.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.3e-242 843.6 695 59.6
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.8e-242 842.0 728 58.1
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 6.0e-240 834.7 807 54.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.0e-239 833.9 838 52.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.3e-239 833.6 777 55.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 8.7e-239 830.9 840 52.4
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.1e-237 826.2 798 54.3
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 8.1e-237 824.3 808 52.8
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 8.1e-237 824.3 843 51.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 2.0e-235 819.7 827 51.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.4e-235 818.9 804 52.6
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.4e-235 818.9 822 51.8
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 9.9e-235 817.4 833 51.5
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 3.2e-233 812.4 823 51.4
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.2e-232 810.4 842 50.6
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.1e-232 809.7 807 52.9
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 6.0e-232 808.1 769 53.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 7.8e-232 807.7 839 50.3
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 7.8e-232 807.7 799 51.8
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.0e-231 805.8 839 51.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.6e-231 804.7 691 60.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 8.7e-231 804.3 804 52.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.9e-230 803.1 681 60.5
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 3.3e-230 802.4 800 52.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.3e-230 802.0 863 49.9
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 7.3e-230 801.2 799 52.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 4.8e-229 798.5 799 52.2
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-228 797.3 778 52.1
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 4.0e-228 795.4 840 50.5
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.2e-227 793.9 840 50.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 7.6e-227 791.2 842 50.0
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 7.6e-227 791.2 842 50.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.4e-225 786.9 835 50.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.4e-225 786.2 778 51.3
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 4.6e-224 781.9 861 49.6
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-222 777.3 861 49.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 6.2e-221 771.5 806 50.5
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.0e-220 768.8 788 51.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 8.4e-218 761.1 685 54.5
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.1e-217 760.8 822 49.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 3.5e-216 755.7 826 48.4
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.0e-215 754.2 848 48.8
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-212 744.2 771 52.1
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 3.4e-211 739.2 799 48.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 6.0e-208 728.4 826 47.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.7e-197 692.6 854 44.3
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.3e-196 688.7 656 53.4
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 1.2e-195 687.6 833 44.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.5e-193 679.9 824 45.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.5e-187 660.6 609 55.0
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.3e-186 657.5 823 45.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.7e-184 649.8 671 50.4
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 8.2e-181 638.3 777 44.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.4e-180 636.7 927 40.2
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.6e-176 624.0 799 43.6
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.4e-172 610.9 873 41.4
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.5e-171 606.3 708 47.2
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.8e-167 594.0 697 46.2
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.6e-160 569.7 716 45.0
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.7e-152 542.7 721 43.4
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.6e-139 499.6 294 87.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.2e-136 489.2 465 53.1
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 2.1e-131 474.2 393 60.6
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.2e-124 449.9 528 44.5
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.7e-122 444.5 697 38.5
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.5e-121 441.4 348 64.9
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.5e-121 440.7 346 63.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.6e-121 439.5 437 54.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.4e-101 372.5 618 35.9
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 2.3e-98 364.4 763 32.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 8.4e-93 345.9 326 55.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 4.2e-92 343.6 369 47.7
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.1e-87 328.9 888 28.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-82 312.0 458 38.0
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 5.9e-78 296.6 353 41.4
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 3.8e-77 293.9 406 41.4
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.7e-69 268.5 290 48.3
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.2e-64 249.6 514 29.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.1e-55 221.1 196 56.6
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.0e-53 216.1 144 77.1
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 8.6e-45 186.4 184 56.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.4e-42 179.1 184 53.3
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.2e-25 122.9 81 79.0
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.4e-25 121.3 118 44.1
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-23 115.9 109 54.1
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.7e-19 100.9 87 64.4
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 6.2e-19 100.5 111 43.2
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.5e-12 79.3 108 42.6
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.6e-11 75.9 64 60.9
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.6e-11 75.9 48 68.8
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 3.6e-11 74.7 59 57.6
MELO3C032006.2 Cucumis melo HOM05D001831 ORTHO05D166811 2.6e-09 68.6 40 87.5
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 9.9e-09 66.6 48 52.1
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.9e-08 64.3 39 64.1
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 4.9e-08 64.3 57 47.4


User provided reference genes

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