Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003440 Citrullus lanatus HOM05D005821 ORTHO05D006649 2.5e-217 758.4 366 100.0
CsaV3_6G000870 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.6e-208 729.2 366 95.4
Sed0010880 Sechium edule HOM05D005821 ORTHO05D006649 1.3e-197 693.0 366 89.9
MELO3C021184.2 Cucumis melo HOM05D005821 ORTHO05D006649 2.6e-182 642.1 322 94.7
RcHm_v2.0_Chr1g0357291 Rosa chinensis HOM05D005821 ORTHO05D006649 1.5e-161 573.2 366 75.7
Prupe.2G175700 Prunus persica HOM05D005821 ORTHO05D006649 1.9e-161 572.8 348 78.7
FvH4_7g15100 Fragaria vesca HOM05D005821 ORTHO05D006649 9.5e-161 570.5 353 77.1
Cfa003883 Carpinus fangiana HOM05D005821 ORTHO05D006649 3.1e-159 565.5 366 75.4
Eucgr.D02318 Eucalyptus grandis HOM05D005821 ORTHO05D006649 5.2e-159 564.7 372 74.2
FAN10G3455 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.8e-159 564.3 353 76.8
MD07G1132800 Malus domestica HOM05D005821 ORTHO05D006649 9.8e-158 560.5 353 75.9
MD01G1069600 Malus domestica HOM05D005821 ORTHO05D006649 4.9e-157 558.1 353 76.8
Haze_15551 Corylus avellana HOM05D005821 ORTHO05D006649 6.4e-157 557.8 362 74.9
TWI59G0254 Tripterygium wilfordii HOM05D005821 ORTHO05D006649 1.4e-156 556.6 351 75.2
AL4G45320 Arabidopsis lyrata HOM05D005821 ORTHO05D006649 4.1e-156 555.1 362 72.9
QL04p055074 Quercus lobata HOM05D005821 ORTHO05D006649 4.1e-156 555.1 367 71.1
CARHR141350 Cardamine hirsuta HOM05D005821 ORTHO05D006649 9.2e-156 553.9 365 72.6
Atru.chr5.549 Acer truncatum HOM05D005821 ORTHO05D006649 1.6e-155 553.1 362 72.9
Carub.0004s2879 Capsella rubella HOM05D005821 ORTHO05D006649 2.0e-155 552.7 356 72.8
A05p06050 Brassica napus HOM05D005821 ORTHO05D006649 2.7e-155 552.4 356 73.6
GSVIVG01027007001 Vitis vinifera HOM05D005821 ORTHO05D006649 4.6e-155 551.6 346 75.7
Manes.01G253300 Manihot esculenta HOM05D005821 ORTHO05D006649 6.0e-155 551.2 363 73.6
Sabra02G0147600 Salix brachista HOM05D005821 ORTHO05D006649 1.0e-154 550.4 369 73.2
CANSAT56G3247 Cannabis sativa HOM05D005821 ORTHO05D006649 3.0e-154 548.9 356 74.4
PGR031G3922 Punica granatum HOM05D005821 ORTHO05D006649 3.9e-154 548.5 368 71.5
Thecc.01G354000 Theobroma cacao HOM05D005821 ORTHO05D006649 3.9e-154 548.5 348 75.0
CiPaw.01G065500 Carya illinoinensis HOM05D005821 ORTHO05D006649 1.9e-153 546.2 349 75.4
Gohir.D08G153700 Gossypium hirsutum HOM05D005821 ORTHO05D006649 4.3e-153 545.0 352 75.3
Potri.002G162900 Populus trichocarpa HOM05D005821 ORTHO05D006649 4.3e-153 545.0 377 71.4
AT2G46090 Arabidopsis thaliana HOM05D005821 ORTHO05D006649 1.2e-152 543.5 354 72.3
Migut.B01789 Erythranthe guttata HOM05D005821 ORTHO05D006649 1.6e-152 543.1 348 72.7
Gorai.004G159600 Gossypium raimondii HOM05D005821 ORTHO05D006649 2.1e-152 542.7 352 75.3
Nn1g01648 Nelumbo nucifera HOM05D005821 ORTHO05D006649 6.2e-152 541.2 348 72.7
BraA05t19569Z Brassica rapa HOM05D005821 ORTHO05D006649 1.4e-151 540.0 346 74.3
Gohir.A08G132300 Gossypium hirsutum HOM05D005821 ORTHO05D006649 1.4e-151 540.0 350 74.6
Sp4g28150 Schrenkiella parvula HOM05D005821 ORTHO05D006649 1.4e-151 540.0 323 77.4
Peaxi162Scf00020g01233 Petunia axillaris HOM05D005821 ORTHO05D006649 1.8e-151 539.7 360 72.5
Cc02_g38430 Coffea canephora HOM05D005821 ORTHO05D006649 2.3e-151 539.3 353 73.4
Lsat_1_v5_gn_3_138360 Lactuca sativa HOM05D005821 ORTHO05D006649 2.3e-151 539.3 353 72.2
TAR375G0805 Trochodendron aralioides HOM05D005821 ORTHO05D006649 4.0e-151 538.5 346 74.6
Nitab4.5_0000915g0180 Nicotiana tabacum HOM05D005821 ORTHO05D006649 8.9e-151 537.3 360 71.9
SGA_v2.0_scaffold4G02290 Striga asiatica HOM05D005821 ORTHO05D006649 8.9e-151 537.3 357 72.0
Dinv43854 Davidia involucrata HOM05D005821 ORTHO05D006649 2.0e-150 536.2 339 74.9
Aqoxy7G00301 Aquilegia oxysepala HOM05D005821 ORTHO05D006649 2.6e-150 535.8 353 70.3
Lj1g0010902 Lotus japonicus HOM05D005821 ORTHO05D006649 2.6e-150 535.8 353 72.2
Ciclev10020792m.g Citrus clementina HOM05D005821 ORTHO05D006649 3.4e-150 535.4 360 73.3
CSS0033562 Camellia sinensis var. sinensis HOM05D005821 ORTHO05D006649 5.8e-150 534.6 349 74.8
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 5.8e-150 534.6 339 73.2
Nitab4.5_0010703g0020 Nicotiana tabacum HOM05D005821 ORTHO05D006649 5.8e-150 534.6 360 71.4
Solyc01g095010.4 Solanum lycopersicum HOM05D005821 ORTHO05D006649 5.8e-150 534.6 353 72.2
Sopen01g038790 Solanum pennellii HOM05D005821 ORTHO05D006649 5.8e-150 534.6 352 72.4
Cpa.g.sc184.24 Carica papaya HOM05D005821 ORTHO05D006649 9.8e-150 533.9 365 72.1
Medtr7g079020 Medicago truncatula HOM05D005821 ORTHO05D006649 3.7e-149 531.9 350 71.7
PGSC0003DMG400000188 Solanum tuberosum HOM05D005821 ORTHO05D006649 3.7e-149 531.9 352 72.4
Actinidia10061 Actinidia chinensis HOM05D005821 ORTHO05D006649 4.9e-149 531.6 337 76.0
Psat3g105200 Pisum sativum HOM05D005821 ORTHO05D006649 8.3e-149 530.8 356 70.2
TPR.G35791 Trifolium pratense HOM05D005821 ORTHO05D006649 1.4e-148 530.0 353 71.1
Thhalv10001507m.g Eutrema salsugineum HOM05D005821 ORTHO05D006649 1.9e-148 529.6 363 69.7
MSTRG.20856 Avicennia marina HOM05D005821 ORTHO05D006649 4.1e-148 528.5 357 72.3
VMungo1383G1209 Vigna mungo HOM05D005821 ORTHO05D006649 5.4e-148 528.1 339 72.6
HanXRQChr06g0167001 Helianthus annuus HOM05D005821 ORTHO05D006649 1.2e-147 526.9 353 71.1
SalBow3G0996 Salvia bowleyana HOM05D005821 ORTHO05D006649 2.1e-147 526.2 390 66.2
Lj9A587T97 Lonicera japonica HOM05D005821 ORTHO05D006649 3.5e-147 525.4 352 71.3
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 6.0e-147 524.6 360 70.6
Glyma.09G254500 Glycine max HOM05D005821 ORTHO05D006649 6.0e-147 524.6 339 72.6
Phvul.008G058100 Phaseolus vulgaris HOM05D005821 ORTHO05D006649 1.0e-146 523.9 356 69.7
Lalb_Chr17g0339001 Lupinus albus HOM05D005821 ORTHO05D006649 1.3e-146 523.5 348 72.4
ECA240G2396 Erigeron canadensis HOM05D005821 ORTHO05D006649 1.7e-146 523.1 320 75.0
Ah.05g180240 Amaranthus hybridus HOM05D005821 ORTHO05D006649 6.6e-146 521.2 341 72.7
FAN01G0645 Fragaria x ananassa HOM05D005821 ORTHO05D006649 6.6e-146 521.2 352 71.3
THA.LOC104817314 Tarenaya hassleriana HOM05D005821 ORTHO05D006649 1.1e-145 520.4 379 67.3
Glyma.18G238500 Glycine max HOM05D005821 ORTHO05D006649 1.5e-145 520.0 351 70.9
MBI11_g09064_MAGBIO Magnolia biondii HOM05D005821 ORTHO05D006649 1.9e-145 519.6 346 71.1
arahy.Tifrunner.gnm1.ann1.WE10J5 Arachis hypogaea HOM05D005821 ORTHO05D006649 3.3e-145 518.8 367 67.3
A04p34280 Brassica napus HOM05D005821 ORTHO05D006649 4.3e-145 518.5 341 72.7
arahy.Tifrunner.gnm1.ann1.01GDC8 Arachis hypogaea HOM05D005821 ORTHO05D006649 9.5e-145 517.3 370 67.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 8.1e-144 514.2 333 73.6
AUR62022607 Chenopodium quinoa HOM05D005821 ORTHO05D006649 1.4e-143 513.5 321 75.4
PSO782G2463 Papaver somniferum HOM05D005821 ORTHO05D006649 1.2e-142 510.4 323 72.4
DCAR_008630 Daucus carota HOM05D005821 ORTHO05D006649 2.6e-142 509.2 340 70.3
Rhsim07G0011400 Rhododendron simsii HOM05D005821 ORTHO05D006649 2.6e-142 509.2 348 72.4
Hund16670 Selenicereus undatus HOM05D005821 ORTHO05D006649 3.4e-142 508.8 321 75.1
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 5.8e-142 508.1 393 64.6
TAR374G1257 Trochodendron aralioides HOM05D005821 ORTHO05D006649 1.1e-140 503.8 347 70.3
vmacro13240 Vaccinium macrocarpon HOM05D005821 ORTHO05D006649 1.2e-139 500.4 374 69.0
ATR0661G113 Amborella trichopoda HOM05D005821 ORTHO05D006649 1.5e-137 493.4 317 71.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.1e-135 487.3 318 73.3
EL10Ac1g00367 Beta vulgaris HOM05D005821 ORTHO05D006649 2.4e-135 486.1 399 61.2
AUR62004401 Chenopodium quinoa HOM05D005821 ORTHO05D006649 4.4e-134 481.9 305 74.1
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.9e-132 476.5 363 66.4
SGA_v2.0_scaffold95G28815 Striga asiatica HOM05D005821 ORTHO05D006649 2.1e-131 473.0 373 63.5
HPP92_025636 Vanilla planifolia HOM05D005821 ORTHO05D006649 6.6e-130 468.0 342 63.5
Oeu015222.1 Olea europaea HOM05D005821 ORTHO05D006649 8.7e-130 467.6 356 67.1
Zm00001eb001870 Zea mays HOM05D005821 ORTHO05D006649 1.6e-128 463.4 320 66.6
CAN.G78.118 Capsicum annuum HOM05D005821 ORTHO05D006649 2.4e-127 459.5 278 77.7
Sc23g0002630 Simmondsia chinensis HOM05D005821 ORTHO05D006649 2.9e-125 452.6 299 72.6
Os03g0125400 Oryza sativa ssp. japonica HOM05D005821 ORTHO05D006649 2.7e-123 446.0 341 61.6
CDE06G2338 Ceratophyllum demersum HOM05D005821 ORTHO05D006649 6.0e-123 444.9 321 65.1
SEGI_25270 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.3e-122 443.7 318 65.7
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.4e-119 433.0 318 66.7
Duzib138G1618 Durio zibethinus HOM05D005821 ORTHO05D006649 2.6e-118 429.5 369 60.7
Hma1.2p1_2961F.1_g330850 Hydrangea macrophylla HOM05D005821 ORTHO05D006649 1.9e-113 413.3 346 60.7
COL.COLO4_12763 Corchorus olitorius HOM05D005821 ORTHO05D006649 2.1e-112 409.8 302 66.6
CsaV3_7G024010 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-111 407.5 221 90.0
Mapoly0047s0043 Marchantia polymorpha HOM05D005821 ORTHO05D006649 3.1e-111 406.0 321 58.6
Actinidia20151 Actinidia chinensis HOM05D005821 ORTHO05D006649 9.3e-100 367.9 216 79.2
SEGI_00842 Sequoiadendron giganteum HOM05D005821 ORTHO05D006649 1.8e-98 363.6 264 65.9
Pp3c4_15190 Physcomitrium patens HOM05D005821 ORTHO05D006649 1.1e-92 344.4 295 55.9
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 5.9e-78 295.4 210 65.7
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.3e-72 277.7 204 67.2
CsaV3_7G023670 Cucumis sativus L. HOM05D005821 ORTHO05D006649 9.4e-68 261.5 184 72.3
Pp3c3_23640 Physcomitrium patens HOM05D005821 ORTHO05D006649 3.1e-63 246.5 200 58.5
arahy.Tifrunner.gnm1.ann1.88DVKJ Arachis hypogaea HOM05D005821 ORTHO05D006649 5.9e-62 242.3 173 62.4
CsaV3_UNG070590 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-60 238.0 118 95.8
CsaV3_UNG139080 Cucumis sativus L. HOM05D005821 ORTHO05D006649 1.1e-60 238.0 118 96.6
CsaV3_3G018770 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.5e-60 236.9 119 95.0
AagrBONN_evm.TU.Sc2ySwM_228.2927 Anthoceros agrestis HOM05D005821 ORTHO05D006649 3.3e-52 209.9 158 55.7
TAR374G0886 Trochodendron aralioides HOM05D005821 ORTHO05D006649 8.0e-51 205.3 145 66.9
MSTRG.28231 Avicennia marina HOM05D005821 ORTHO05D006649 2.8e-43 180.3 111 75.7
CsaV3_UNG069570 Cucumis sativus L. HOM05D005821 ORTHO05D006649 4.7e-43 179.5 92 95.7
PSO349G0068 Papaver somniferum HOM05D000127 ORTHO05D006649 1.2e-33 148.3 96 65.6
PRCOL_00004349 Prasinoderma coloniale HOM05D005821 ORTHO05D006649 3.4e-33 146.7 382 27.2
SMO011G0016 Selaginella moellendorffii HOM05D005821 ORTHO05D006649 5.8e-33 146.0 133 48.9
BcaC07g41755 Brassica carinata HOM05D001218 ORTHO05D003142 7.1e-31 139.0 93 69.9
CsaV3_UNG082640 Cucumis sativus L. HOM05D005821 ORTHO05D006649 2.7e-30 137.1 67 94.0
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.9e-28 131.0 196 38.8
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 3.9e-21 106.7 84 61.9
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.9e-20 104.4 273 28.6
Gorai.004G111600 Gossypium raimondii HOM05D005821 ORTHO05D029888 5.6e-20 102.8 94 59.6
CsaV3_4G038020 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.2e-18 96.3 48 93.8
CsaV3_UNG040220 Cucumis sativus L. HOM05D005821 ORTHO05D006649 5.2e-18 96.3 48 93.8
C04p71120 Brassica napus HOM05D000113 ORTHO05D001353 7.6e-17 92.4 69 66.7
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 2.5e-12 77.4 346 22.8
CAN.G517.26 Capsicum annuum HOM05D005821 ORTHO05D006649 1.3e-11 75.1 56 60.7
MD02G1103100 Malus domestica HOM05D005821 ORTHO05D006649 4.8e-11 73.2 60 63.3
MD12G1254600 Malus domestica HOM05D005821 ORTHO05D006649 6.2e-11 72.8 60 63.3
CsaV3_2G000040 Cucumis sativus L. HOM05D001245 ORTHO05D004475 2.4e-10 70.9 31 96.8
SGA_v2.0_scaffold63G21843 Striga asiatica HOM05D002903 ORTHO05D003066 2.4e-10 70.9 46 73.9
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 6.9e-10 69.3 343 21.6
Pp3c2_22010 Physcomitrium patens HOM05D004444 ORTHO05D005246 1.2e-09 68.6 185 31.4
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 1.5e-09 68.2 364 23.9
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 2.0e-09 67.8 356 22.8
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 2.0e-09 67.8 369 22.0
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 4.5e-09 66.6 342 23.4
Thecc.03G089300 Theobroma cacao HOM05D005821 ORTHO05D006649 7.6e-09 65.9 40 70.0
SEGI_02431 Sequoiadendron giganteum HOM05D004444 ORTHO05D005246 9.9e-09 65.5 192 27.6
C07p44100 Brassica napus HOM05D004444 ORTHO05D005246 1.3e-08 65.1 186 24.7
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.3e-08 65.1 348 23.3
THA.LOC104800589 Tarenaya hassleriana HOM05D004444 ORTHO05D005246 1.3e-08 65.1 192 27.6
BcaNung03734 Brassica carinata HOM05D004444 ORTHO05D005246 1.7e-08 64.7 186 24.7
BcaNung03855 Brassica carinata HOM05D004444 ORTHO05D005246 1.7e-08 64.7 186 24.7
A06p34440 Brassica napus HOM05D004444 ORTHO05D005246 1.7e-08 64.7 186 24.7
Pp3c1_15060 Physcomitrium patens HOM05D004444 ORTHO05D005246 2.2e-08 64.3 168 30.4
CARHR190060 Cardamine hirsuta HOM05D004444 ORTHO05D005246 2.9e-08 63.9 186 25.3
Sp6g34510 Schrenkiella parvula HOM05D004444 ORTHO05D005246 6.4e-08 62.8 191 26.2
AL6G34740 Arabidopsis lyrata HOM05D004444 ORTHO05D005246 8.4e-08 62.4 186 24.7
AT5G23450 Arabidopsis thaliana HOM05D004444 ORTHO05D005246 8.4e-08 62.4 186 25.3
Carub.0006s2125 Capsella rubella HOM05D004444 ORTHO05D005246 8.4e-08 62.4 186 24.7
Dinv15321 Davidia involucrata HOM05D005821 ORTHO05D006649 8.4e-08 62.4 53 58.5
BcaC05g29489 Brassica carinata HOM05D005821 ORTHO05D006649 1.1e-07 62.0 32 87.5
A02p40960 Brassica napus HOM05D004444 ORTHO05D005246 1.4e-07 61.6 186 24.2
MBI14_g39032_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-07 61.6 52 53.8
TPR.G25204 Trifolium pratense HOM05D004444 ORTHO05D005246 1.4e-07 61.6 187 25.7
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 1.9e-07 61.2 332 21.1
C02p60850 Brassica napus HOM05D004444 ORTHO05D005246 2.4e-07 60.8 186 24.2
Psat1g052480 Pisum sativum HOM05D004444 ORTHO05D005246 2.4e-07 60.8 187 25.7
Medtr6g004070 Medicago truncatula HOM05D004444 ORTHO05D005246 3.2e-07 60.5 187 25.7
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 5.4e-07 59.7 209 26.3
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 9.3e-07 58.9 195 27.7
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 9.3e-07 58.9 195 27.7
Mapoly0012s0022 Marchantia polymorpha HOM05D004444 ORTHO05D005246 9.3e-07 58.9 185 26.5
Os08g0152700 Oryza sativa ssp. japonica HOM05D004444 ORTHO05D005246 9.3e-07 58.9 204 27.9
Ca_04130_v3 Cicer arietinum L. HOM05D004444 ORTHO05D005246 1.6e-06 58.2 187 24.6
Ciclev10014323m.g Citrus clementina HOM05D004444 ORTHO05D005246 1.6e-06 58.2 186 26.3
Manes.11G000400 Manihot esculenta HOM05D004444 ORTHO05D005246 1.6e-06 58.2 187 25.1
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 2.1e-06 57.8 341 22.9
PRCOL_00005757 Prasinoderma coloniale HOM05D004176 ORTHO05D004845 2.1e-06 57.8 155 26.5
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 2.7e-06 57.4 202 27.7
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 7.9e-06 55.8 203 27.6


User provided reference genes

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