Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 0.0e+00 1090.1 564 100.0
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.6e-252 875.9 589 80.5
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.4e-249 864.0 567 79.9
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 6.2e-220 767.7 481 85.7
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 4.7e-143 512.3 600 52.8
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 6.9e-126 455.3 695 44.6
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 5.8e-125 452.2 614 47.6
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 4.9e-124 449.1 587 48.6
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 2.4e-123 446.8 576 48.8
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 2.4e-123 446.8 596 48.5
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.2e-123 446.4 577 49.4
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 5.4e-123 445.7 587 48.4
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.5e-122 443.0 577 47.5
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.6e-122 442.6 593 48.2
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 6.0e-122 442.2 566 48.1
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.3e-121 440.3 581 48.0
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 5.6e-120 435.6 563 50.1
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.6e-120 435.6 560 49.5
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 1.4e-118 431.0 551 48.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.4e-118 431.0 596 47.3
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 7.6e-117 425.2 542 49.1
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 8.4e-116 421.8 580 46.7
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 8.4e-116 421.8 582 46.0
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 7.1e-115 418.7 590 45.8
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 9.3e-115 418.3 575 46.1
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 2.1e-114 417.2 592 45.8
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 4.6e-114 416.0 589 46.2
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.3e-113 414.5 616 44.3
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.8e-113 414.1 551 47.5
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 5.1e-113 412.5 582 46.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.3e-111 407.9 578 46.5
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 2.1e-111 407.1 581 46.3
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 2.1e-111 407.1 586 45.4
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 6.2e-111 405.6 586 45.6
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 2.4e-110 403.7 575 43.7
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.4e-110 403.7 575 44.7
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 9.0e-110 401.7 575 44.7
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 9.0e-110 401.7 592 45.8
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.6e-109 400.2 583 46.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 2.6e-109 400.2 582 45.7
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 4.5e-109 399.4 596 43.5
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 5.8e-109 399.1 589 45.2
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.9e-107 394.0 578 45.8
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.2e-107 393.3 586 44.5
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 7.1e-107 392.1 579 44.4
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 1.2e-106 391.3 585 44.6
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 1.2e-106 391.3 593 45.0
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.6e-106 391.0 594 45.8
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 1.0e-105 388.3 592 44.6
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.8e-105 387.5 583 44.9
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 5.1e-105 386.0 590 43.2
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 6.7e-105 385.6 592 43.1
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 5.6e-104 382.5 590 44.2
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 7.4e-104 382.1 577 43.3
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 6.2e-103 379.0 595 42.7
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 1.8e-102 377.5 603 43.6
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.8e-102 377.5 603 43.6
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.3e-102 375.9 603 43.1
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-101 373.6 604 43.2
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 7.6e-101 372.1 520 44.8
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 5.5e-99 365.9 610 42.8
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 7.1e-99 365.5 581 44.2
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.3e-97 361.3 561 42.8
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.5e-96 357.1 514 44.9
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 7.4e-96 355.5 572 42.1
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 5.3e-94 349.4 571 42.2
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 3.4e-93 346.7 514 44.4
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.3e-92 344.7 506 45.1
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 7.2e-91 339.0 565 40.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 1.4e-89 334.7 596 42.4
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.9e-89 333.2 531 42.6
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 3.9e-89 333.2 616 39.3
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 8.8e-89 332.0 291 60.8
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 7.4e-88 328.9 574 40.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.8e-87 327.0 571 39.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-86 325.1 604 40.1
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 6.9e-86 322.4 570 40.7
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 6.9e-86 322.4 566 41.0
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 6.9e-86 322.4 530 41.1
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.2e-85 321.6 298 58.7
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.5e-85 319.7 563 40.1
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 5.9e-85 319.3 572 39.7
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 1.3e-84 318.2 563 39.6
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.3e-84 318.2 503 42.1
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.2e-84 317.4 569 40.1
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 6.5e-84 315.8 562 40.4
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-83 315.1 562 39.7
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.1e-83 315.1 562 40.0
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 1.1e-83 315.1 629 37.7
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 1.1e-83 315.1 548 41.2
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 3.2e-83 313.5 563 40.0
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 7.2e-83 312.4 562 40.0
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.3e-81 307.4 588 37.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 3.0e-81 307.0 571 39.1
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.1e-80 305.1 570 38.4
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 1.3e-79 301.6 566 38.9
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 4.8e-79 299.7 603 38.1
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 5.9e-77 292.7 565 39.5
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 5.9e-77 292.7 565 39.5
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 5.9e-77 292.7 565 39.5
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-75 288.5 500 39.8
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.9e-75 287.7 531 39.7
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 9.4e-75 285.4 602 39.2
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 9.4e-75 285.4 296 55.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.6e-74 284.6 292 54.5
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 8.0e-74 282.3 561 37.4
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.8e-73 281.2 531 38.2
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 7.0e-70 269.2 588 34.5
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.2e-68 264.2 565 36.8
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 5.0e-68 263.1 457 39.8
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.9e-67 261.2 584 32.7
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 4.7e-66 256.5 223 61.0
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 8.8e-65 252.3 266 52.6
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-64 250.8 266 52.3
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 3.7e-63 246.9 265 53.6
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.8e-63 246.5 497 38.8
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.8e-63 246.5 266 51.5
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.3e-63 246.1 505 38.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.7e-61 239.2 266 51.9
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 2.0e-56 224.6 429 38.9
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 9.8e-56 222.2 286 46.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.1e-54 218.8 486 36.0
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 3.5e-53 213.8 622 31.2
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.0e-49 200.3 282 40.8
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.4e-48 197.2 287 45.3
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 9.8e-48 195.7 476 35.1
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.4e-46 191.8 418 35.2
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.3e-44 184.5 419 37.9
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.4e-40 170.6 512 31.1
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 5.6e-35 153.3 126 58.7
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 8.0e-34 149.4 162 48.8
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.3e-33 147.9 125 58.4
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-31 140.6 97 71.1
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.6e-29 135.2 321 35.8
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 1.6e-26 125.2 341 31.4
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 4.0e-25 120.6 134 52.2
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 6.4e-23 113.2 405 29.6
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 7.1e-22 109.8 366 31.4
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.6e-21 108.6 131 46.6
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.7e-20 105.1 118 46.6
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.1e-19 102.4 161 41.0
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 2.4e-17 94.7 159 34.6
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 2.0e-16 91.7 286 26.9
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 4.4e-16 90.5 117 47.9
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.7e-15 88.6 101 46.5
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.4e-15 86.7 376 29.3
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.0e-12 79.3 125 42.4
ATR0804G093 Amborella trichopoda HOM05D004687 ORTHO05D006002 9.3e-06 56.2 50 62.0


User provided reference genes

Program Settings