Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 2.1e-115 419.1 214 100.0
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.1e-108 396.7 214 94.4
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 3.9e-106 388.3 214 92.1
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 9.0e-95 350.5 214 84.1
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 2.2e-88 329.3 205 80.0
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.8e-87 326.2 213 78.4
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 2.0e-86 322.8 218 75.7
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 5.9e-86 321.2 218 75.2
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 4.2e-84 315.1 210 75.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 7.2e-84 314.3 218 74.3
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 9.4e-84 313.9 211 74.4
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 6.1e-83 311.2 212 73.6
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 1.4e-82 310.1 194 77.3
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 2.3e-82 309.3 210 74.8
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.1e-81 307.0 193 77.7
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 9.7e-81 303.9 217 70.0
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.3e-80 303.5 210 75.2
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 3.7e-80 302.0 214 72.0
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 4.8e-80 301.6 214 72.0
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 1.1e-79 300.4 188 76.6
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 1.4e-79 300.1 211 71.6
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 3.1e-79 298.9 220 70.0
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 4.1e-79 298.5 219 68.9
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 4.1e-79 298.5 219 68.9
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 9.1e-79 297.4 209 71.3
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.2e-78 297.0 211 70.1
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 1.5e-78 296.6 225 67.1
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.0e-78 296.2 214 69.6
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 2.0e-78 296.2 206 74.3
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 7.7e-78 294.3 214 68.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 7.7e-78 294.3 178 80.3
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 7.7e-78 294.3 183 78.7
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.3e-77 293.5 214 68.7
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.3e-77 293.5 204 72.1
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 5.0e-77 291.6 214 72.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 8.5e-77 290.8 222 67.6
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.5e-77 290.8 214 68.2
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 8.5e-77 290.8 214 70.6
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 2.5e-76 289.3 206 69.4
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 2.5e-76 289.3 187 73.8
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.2e-76 288.9 222 67.6
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 7.2e-76 287.7 188 73.4
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 9.4e-76 287.3 206 71.4
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 1.2e-75 287.0 195 71.8
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.1e-75 286.2 212 69.8
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 2.7e-75 285.8 210 68.1
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.6e-75 285.4 227 68.3
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 3.6e-75 285.4 201 68.2
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.0e-74 283.9 187 72.2
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.0e-74 283.9 188 73.4
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 3.0e-74 282.3 205 68.3
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 3.0e-74 282.3 177 74.6
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.9e-74 282.0 188 75.5
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.9e-74 282.0 205 68.3
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.9e-74 282.0 205 68.3
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 2.0e-73 279.6 185 71.9
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 2.6e-73 279.3 180 74.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 4.4e-73 278.5 177 79.1
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 1.3e-72 276.9 208 67.8
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 2.2e-72 276.2 188 70.7
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 4.8e-72 275.0 188 70.7
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 4.8e-72 275.0 207 67.6
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 4.8e-72 275.0 214 68.7
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 1.1e-71 273.9 200 67.0
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 2.4e-71 272.7 216 66.2
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 5.3e-71 271.6 178 74.2
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 5.3e-71 271.6 178 74.2
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 9.1e-71 270.8 203 67.5
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 9.1e-71 270.8 219 63.5
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.6e-70 269.2 175 74.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.6e-70 269.2 175 74.9
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 5.9e-70 268.1 175 70.9
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.0e-69 267.3 213 64.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 3.8e-69 265.4 210 66.2
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 5.0e-69 265.0 232 62.1
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 6.5e-69 264.6 210 63.3
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 5.5e-68 261.5 177 71.2
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 6.1e-67 258.1 141 86.5
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 6.1e-67 258.1 237 59.5
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 1.4e-66 256.9 144 84.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.3e-64 250.4 192 69.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 3.1e-63 245.7 182 69.2
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 4.5e-62 241.9 141 81.6
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 2.2e-61 239.6 184 70.1
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.2e-61 239.6 170 67.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.5e-60 236.1 173 65.3
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 5.5e-60 235.0 208 57.7
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 7.2e-60 234.6 171 70.2
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.1e-59 231.5 180 67.2
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 6.1e-59 231.5 173 62.4
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.0e-58 229.2 173 61.8
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 5.2e-58 228.4 173 63.6
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 4.4e-57 225.3 174 66.1
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.1e-55 220.7 180 66.1
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.3e-53 213.8 164 61.6
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 8.0e-51 204.5 155 70.3
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.3e-44 182.6 166 62.0
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 7.5e-41 171.4 151 61.6
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.7e-40 169.1 183 49.7
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 4.6e-38 162.2 133 60.2
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 6.6e-37 158.3 176 49.4
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 8.6e-37 157.9 123 63.4
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.5e-36 156.4 196 45.9
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 4.4e-33 145.6 85 76.5
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 7.5e-33 144.8 231 39.0
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.3e-32 144.1 85 75.3
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 6.2e-27 125.2 170 42.4
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.9e-24 116.3 176 41.5
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 2.1e-22 110.2 81 65.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 2.7e-22 109.8 56 82.1
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 6.0e-22 108.6 96 60.4
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 2.6e-17 93.2 82 56.1
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 7.6e-17 91.7 71 67.6
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 2.5e-12 76.6 81 51.9
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 8.1e-11 71.6 83 50.6
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 4.0e-10 69.3 76 53.9
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 5.2e-10 68.9 73 52.1
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 1.2e-09 67.8 198 26.8
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 3.4e-09 66.2 144 29.2
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 2.9e-08 63.2 33 81.8
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.8e-08 62.8 34 76.5
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 3.8e-08 62.8 152 28.9
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 3.8e-08 62.8 177 29.4
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.9e-08 62.4 188 28.7
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 8.4e-08 61.6 149 26.8
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 1.1e-07 61.2 141 31.2
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.1e-07 61.2 193 26.4
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.9e-07 60.5 172 27.3
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.9e-07 60.5 192 25.0
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 3.2e-07 59.7 187 25.1
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 3.2e-07 59.7 205 25.9
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 3.2e-07 59.7 195 28.7
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 4.2e-07 59.3 189 26.5
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 4.2e-07 59.3 180 27.2
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 5.4e-07 58.9 106 29.2
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 5.4e-07 58.9 106 31.1
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 7.1e-07 58.5 196 28.1
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 7.1e-07 58.5 189 22.8
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 7.1e-07 58.5 166 28.9
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 9.3e-07 58.2 170 27.6
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 9.3e-07 58.2 254 26.4
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.6e-06 57.4 192 26.0
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 1.6e-06 57.4 191 26.2
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.6e-06 57.4 141 27.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 1.6e-06 57.4 105 29.5
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 1.6e-06 57.4 220 21.4
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 2.1e-06 57.0 173 27.7
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 2.1e-06 57.0 171 29.2
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 2.1e-06 57.0 111 30.6
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 2.7e-06 56.6 192 24.0
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 2.7e-06 56.6 182 27.5
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 2.7e-06 56.6 192 25.5
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 3.5e-06 56.2 192 24.5
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 3.5e-06 56.2 106 30.2
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 3.5e-06 56.2 142 27.5
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 3.5e-06 56.2 141 26.2
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 6.0e-06 55.5 141 28.4
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 6.0e-06 55.5 146 26.7
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 6.0e-06 55.5 127 26.8
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 7.8e-06 55.1 211 27.0
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 7.8e-06 55.1 189 24.3
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 7.8e-06 55.1 176 27.3
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 7.8e-06 55.1 189 24.9


User provided reference genes

Program Settings