Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.1e-190 669.8 337 100.0
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.3e-177 625.5 328 94.8
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 3.0e-177 625.2 328 95.4
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 4.6e-170 601.3 328 91.2
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 6.7e-145 517.7 319 78.7
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.1e-142 508.4 319 76.5
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.7e-141 504.2 330 74.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 3.8e-140 501.9 321 77.3
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.1e-139 500.4 319 74.9
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.9e-139 499.6 322 73.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 9.4e-139 497.3 319 75.9
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.0e-138 494.2 319 73.7
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 3.0e-137 492.3 319 73.7
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 3.0e-137 492.3 322 74.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.4e-136 488.4 319 74.6
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 5.7e-136 488.0 319 73.7
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 5.7e-136 488.0 321 75.1
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 9.7e-136 487.3 323 73.7
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.8e-135 485.7 321 75.1
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 6.3e-135 484.6 316 74.7
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 8.2e-135 484.2 319 73.4
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.4e-134 483.4 320 72.5
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 4.1e-134 481.9 319 70.5
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.1e-134 481.9 319 71.2
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.2e-133 480.3 319 70.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.6e-133 479.2 321 74.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 4.5e-133 478.4 321 73.2
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 7.7e-133 477.6 323 71.8
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 1.0e-132 477.2 319 73.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.0e-132 477.2 319 73.0
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-132 475.7 319 70.5
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.8e-132 475.3 323 74.3
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.5e-132 474.6 321 72.6
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 6.5e-132 474.6 319 71.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 9.4e-131 470.7 321 72.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 2.7e-130 469.2 319 71.2
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.6e-130 468.8 320 71.2
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.0e-129 465.7 319 70.2
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-129 465.7 321 71.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 4.0e-129 465.3 319 71.2
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 5.2e-129 464.9 319 69.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 5.2e-129 464.9 366 65.6
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 6.8e-129 464.5 315 71.4
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.5e-128 463.4 321 70.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.6e-128 462.6 322 70.8
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-128 462.6 322 70.8
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-128 462.6 322 70.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 3.4e-128 462.2 319 69.6
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.4e-128 462.2 316 69.3
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.7e-128 461.5 319 69.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 5.7e-128 461.5 323 68.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.7e-128 461.5 321 71.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.3e-127 460.3 321 69.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.3e-127 458.0 321 70.7
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 3.1e-126 455.7 316 67.7
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.1e-126 455.7 319 68.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.1e-126 455.3 319 68.3
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 4.1e-126 455.3 319 68.3
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-125 453.4 321 69.5
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.6e-125 453.4 323 68.1
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.7e-125 452.6 321 68.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.5e-125 452.2 321 68.5
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 5.9e-125 451.4 317 70.0
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 5.9e-125 451.4 319 68.3
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 7.7e-125 451.1 323 67.2
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 7.7e-125 451.1 323 67.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-124 450.7 323 68.4
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.3e-124 450.3 321 68.8
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.9e-124 449.1 327 65.4
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 5.0e-124 448.4 324 68.2
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 6.5e-124 448.0 321 66.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 1.1e-123 447.2 327 68.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.7e-122 442.6 323 67.2
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 4.7e-122 441.8 322 66.1
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 6.1e-122 441.4 321 69.5
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 2.3e-121 439.5 322 65.5
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 3.0e-121 439.1 319 66.5
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 3.0e-121 439.1 322 66.8
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 5.2e-121 438.3 321 65.4
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 8.8e-121 437.6 321 67.9
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 1.2e-120 437.2 320 66.6
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.0e-120 436.4 322 64.9
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.7e-120 434.9 318 66.7
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 9.8e-120 434.1 304 68.1
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 9.8e-120 434.1 321 67.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.7e-119 433.3 322 63.4
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 3.7e-119 432.2 322 63.7
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.1e-118 430.6 322 63.7
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.4e-118 430.3 322 63.4
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.4e-118 430.3 322 63.4
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.4e-118 430.3 303 67.7
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 4.1e-118 428.7 322 63.0
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.0e-117 426.4 308 66.2
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 3.5e-117 425.6 322 64.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.0e-116 424.1 322 63.4
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 1.7e-116 423.3 277 75.1
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 2.9e-116 422.5 322 62.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 3.8e-116 422.2 316 66.5
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 6.6e-116 421.4 264 76.9
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.5e-115 420.2 323 63.5
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 3.3e-115 419.1 322 62.4
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 5.6e-115 418.3 322 62.4
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 7.2e-115 417.9 319 65.8
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 2.9e-111 406.0 324 62.7
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.0e-109 399.8 283 69.6
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 7.8e-109 397.9 371 55.8
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.3e-108 397.1 294 67.3
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 5.6e-107 391.7 321 60.4
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 7.3e-107 391.3 254 76.0
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 6.8e-105 384.8 328 58.5
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 5.8e-104 381.7 323 58.5
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-103 379.0 327 57.8
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.4e-102 376.3 413 53.5
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 4.3e-99 365.5 321 60.1
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.5e-99 364.4 322 59.3
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 2.8e-98 362.8 539 41.2
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.2e-97 358.6 681 36.3
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 6.8e-97 358.2 284 62.7
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-93 347.1 320 56.6
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.7e-92 343.6 272 64.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-91 339.7 262 62.6
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 4.0e-89 332.4 220 71.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.4e-87 325.1 300 53.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.9e-86 323.6 300 53.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.4e-86 322.0 305 51.1
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 7.1e-86 321.6 234 66.7
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.8e-80 302.0 200 75.0
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.4e-78 297.4 253 58.1
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 2.8e-74 283.1 309 47.6
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.5e-69 266.2 220 59.5
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.9e-67 260.4 177 72.9
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.3e-55 221.1 298 39.6
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 1.7e-47 194.1 189 49.7
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 4.8e-34 149.4 96 75.0
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.7e-31 141.0 93 67.7
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.0e-31 139.4 93 67.7
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.1e-30 138.3 99 66.7
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 8.8e-28 128.6 119 58.0
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 1.1e-27 128.3 75 74.7
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.0e-27 127.5 99 63.6
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 7.4e-27 125.6 327 28.4
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 6.3e-26 122.5 86 72.1
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 9.7e-19 98.6 81 55.6
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 3.1e-17 93.6 88 53.4
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 1.5e-14 84.7 76 65.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 9.4e-14 82.0 79 57.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.7e-07 61.2 75 49.3
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.7e-07 61.2 75 49.3
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.7e-07 61.2 71 42.3
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 2.2e-07 60.8 75 49.3
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.9e-06 57.8 43 62.8
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.2e-06 57.0 50 54.0


User provided reference genes

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