Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 3.8e-24 114.0 57 100.0
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 7.1e-23 109.8 56 94.6
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 6.0e-22 106.7 56 92.9
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.8e-21 105.1 56 91.1
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 2.5e-20 101.3 56 87.5
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 7.4e-20 99.8 56 82.1
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 7.4e-20 99.8 55 87.3
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 1.3e-19 99.0 57 86.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.6e-19 98.6 56 83.9
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 2.2e-19 98.2 56 82.1
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.2e-19 98.2 56 82.1
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 3.7e-19 97.4 56 82.1
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 4.8e-19 97.1 56 83.9
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 8.2e-19 96.3 56 78.6
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 8.2e-19 96.3 56 82.1
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 8.2e-19 96.3 56 82.1
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 8.2e-19 96.3 56 78.6
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 1.1e-18 95.9 56 78.6
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.8e-18 95.1 56 80.4
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.8e-18 95.1 56 80.4
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.8e-18 95.1 56 78.6
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.8e-18 95.1 56 82.1
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 2.4e-18 94.7 56 80.4
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 3.1e-18 94.4 56 76.8
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 3.1e-18 94.4 56 80.4
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 3.1e-18 94.4 56 80.4
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 3.1e-18 94.4 56 78.6
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 5.3e-18 93.6 56 80.4
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 5.3e-18 93.6 56 82.1
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 5.3e-18 93.6 56 80.4
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.3e-18 93.6 53 84.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 82.1
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 6.9e-18 93.2 56 78.6
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 9.0e-18 92.8 56 80.4
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 9.0e-18 92.8 56 78.6
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 9.0e-18 92.8 56 80.4
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 1.2e-17 92.4 56 80.4
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 1.2e-17 92.4 56 76.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 1.5e-17 92.0 56 75.0
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 2.0e-17 91.7 55 81.8
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 2.0e-17 91.7 56 76.8
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.0e-17 91.7 57 82.5
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.0e-17 91.7 56 80.4
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 2.6e-17 91.3 56 76.8
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 3.4e-17 90.9 56 76.8
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.5e-17 90.5 56 78.6
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.5e-17 90.5 56 78.6
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 4.5e-17 90.5 56 78.6
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 4.5e-17 90.5 54 81.5
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 4.5e-17 90.5 56 76.8
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 5.9e-17 90.1 56 78.6
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 5.9e-17 90.1 55 81.8
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 5.9e-17 90.1 56 78.6
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 7.6e-17 89.7 55 81.8
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 7.6e-17 89.7 56 78.6
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 7.6e-17 89.7 56 71.4
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.0e-16 89.4 56 71.4
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.0e-16 89.4 57 77.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.3e-16 89.0 56 78.6
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 1.3e-16 89.0 56 73.2
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 1.3e-16 89.0 56 73.2
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.3e-16 89.0 56 71.4
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.7e-16 88.6 56 75.0
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.7e-16 88.6 56 75.0
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.7e-16 88.6 58 75.9
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 2.2e-16 88.2 52 80.8
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.2e-16 88.2 55 76.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.2e-16 88.2 56 75.0
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 2.9e-16 87.8 54 79.6
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 2.9e-16 87.8 58 77.6
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 2.9e-16 87.8 56 75.0
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 3.8e-16 87.4 56 71.4
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 5.0e-16 87.0 56 69.6
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 6.5e-16 86.7 56 76.8
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 6.5e-16 86.7 56 76.8
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 8.5e-16 86.3 56 71.4
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 1.4e-15 85.5 55 74.5
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 2.5e-15 84.7 56 76.8
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 2.5e-15 84.7 56 76.8
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 2.5e-15 84.7 56 75.0
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 5.5e-15 83.6 56 69.6
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 9.3e-15 82.8 56 75.0
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 9.3e-15 82.8 50 78.0
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 1.2e-14 82.4 56 73.2
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.2e-14 82.4 47 87.2
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.7e-14 81.3 54 72.2
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.6e-14 80.5 74 56.8
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.0e-13 79.3 56 71.4
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.4e-13 79.0 48 81.2
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 3.0e-13 77.8 57 66.7
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 3.9e-13 77.4 56 67.9
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 6.7e-13 76.6 48 79.2
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.5e-12 75.5 48 79.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 4.3e-12 73.9 48 75.0
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 4.8e-11 70.5 104 44.2
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 5.5e-07 57.0 45 75.6
AUR62016412 Chenopodium quinoa HOM05D007265 ORTHO05D009118 1.6e-06 55.5 58 51.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.1e-06 55.1 30 80.0
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 2.1e-06 55.1 30 80.0
FAN10G0450 Fragaria x ananassa HOM05D007283 ORTHO05D013080 4.7e-06 53.9 29 82.8


User provided reference genes

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