Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 1.2e-142 510.0 292 100.0
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 9.7e-124 447.2 285 87.7
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 5.7e-108 394.8 287 83.6
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 2.8e-91 339.3 290 69.0
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 1.1e-90 337.4 285 67.4
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 2.4e-90 336.3 285 67.4
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 4.5e-89 332.0 287 65.9
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 9.5e-87 324.3 287 64.8
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 2.7e-86 322.8 287 64.1
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 6.1e-86 321.6 285 63.9
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.4e-85 320.5 285 69.8
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 2.3e-85 319.7 289 67.5
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 6.8e-85 318.2 287 63.1
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 1.5e-84 317.0 290 60.3
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 3.4e-84 315.8 287 62.7
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 4.4e-84 315.5 288 61.8
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 5.7e-84 315.1 293 62.5
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 9.8e-84 314.3 287 62.0
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 1.7e-83 313.5 276 65.2
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 1.7e-83 313.5 288 62.5
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 8.3e-83 311.2 237 75.1
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 8.3e-83 311.2 276 64.1
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 1.1e-82 310.8 304 60.9
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 1.1e-82 310.8 257 67.3
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 2.4e-82 309.7 287 61.7
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 7.0e-82 308.1 286 60.1
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 1.2e-81 307.4 284 61.3
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.6e-81 307.0 286 60.5
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 2.0e-81 306.6 286 59.8
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 2.0e-81 306.6 286 63.3
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.0e-81 306.6 284 62.0
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.7e-81 306.2 269 63.6
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 2.7e-81 306.2 269 63.6
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 5.9e-81 305.1 286 59.4
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 5.9e-81 305.1 286 59.4
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 5.9e-81 305.1 286 62.6
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 7.7e-81 304.7 286 61.5
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 5.0e-80 302.0 289 61.9
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 5.0e-80 302.0 294 58.2
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 6.6e-80 301.6 288 60.1
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 8.6e-80 301.2 297 59.6
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.6e-80 301.2 290 61.0
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.1e-79 300.8 263 64.6
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.5e-79 300.4 255 67.1
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.9e-79 300.1 289 61.6
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 4.3e-79 298.9 266 63.9
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 7.3e-79 298.1 287 60.3
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 9.5e-79 297.7 263 65.0
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 2.1e-78 296.6 257 66.5
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.8e-78 296.2 266 63.9
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.8e-78 296.2 263 64.3
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 4.7e-78 295.4 263 64.6
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 4.7e-78 295.4 286 59.8
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 6.1e-78 295.0 271 61.6
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 1.0e-77 294.3 281 65.8
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 1.4e-77 293.9 259 64.5
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 1.8e-77 293.5 257 63.8
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 1.8e-77 293.5 353 55.8
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.3e-77 293.1 276 62.0
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 3.0e-77 292.7 294 60.2
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 5.2e-77 292.0 256 63.7
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 6.8e-77 291.6 256 63.3
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 8.9e-77 291.2 256 63.7
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 8.9e-77 291.2 259 62.9
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.5e-76 290.4 289 58.1
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.0e-76 290.0 313 60.1
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 3.4e-76 289.3 262 64.1
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 5.7e-76 288.5 256 63.3
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 5.7e-76 288.5 256 63.3
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 5.7e-76 288.5 271 60.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 7.5e-76 288.1 256 63.3
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 9.8e-76 287.7 290 56.9
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 9.8e-76 287.7 322 54.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 1.3e-75 287.3 290 59.7
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 1.7e-75 287.0 316 56.6
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 6.4e-75 285.0 257 61.9
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 1.4e-74 283.9 286 58.0
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.8e-74 283.5 257 63.0
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 1.8e-74 283.5 274 61.7
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 3.2e-74 282.7 255 62.4
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 5.4e-74 282.0 240 68.3
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 3.5e-73 279.3 264 60.6
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 7.8e-73 278.1 251 67.7
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 3.0e-72 276.2 251 61.8
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.9e-71 273.5 287 57.5
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 3.3e-71 272.7 263 60.1
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 3.6e-70 269.2 253 58.5
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.0e-68 263.5 269 58.0
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 3.4e-68 262.7 283 54.4
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 4.4e-68 262.3 295 54.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 5.8e-68 261.9 258 61.2
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 7.5e-68 261.5 250 59.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 9.8e-68 261.2 253 60.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 2.2e-67 260.0 271 57.6
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 6.4e-67 258.5 332 51.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 8.3e-67 258.1 347 47.8
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 1.4e-66 257.3 254 57.5
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 4.1e-66 255.8 283 53.4
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 7.0e-66 255.0 283 53.4
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 9.2e-66 254.6 285 52.3
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 6.0e-65 251.9 213 64.8
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 1.1e-63 247.7 365 46.6
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.4e-60 236.1 283 54.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.9e-58 230.3 264 49.2
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 3.2e-58 229.6 221 59.7
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 3.9e-56 222.6 281 50.9
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 1.1e-53 214.5 157 76.4
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 2.3e-53 213.4 284 48.6
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.2e-51 206.8 229 54.6
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.3e-48 196.8 220 55.9
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 6.6e-48 195.3 173 64.2
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.7e-43 180.6 174 59.8
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 1.4e-42 177.6 282 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.4e-42 176.8 238 44.1
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 3.2e-42 176.4 238 44.1
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 6.0e-41 172.2 260 41.9
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 1.3e-40 171.0 183 58.5
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 7.3e-39 165.2 142 68.3
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.1e-38 163.7 125 73.6
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.3e-35 154.5 219 42.5
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 9.3e-34 148.3 230 42.2
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 6.2e-30 135.6 234 33.8
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 1.5e-28 131.0 116 62.1
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 1.5e-28 131.0 149 54.4
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 5.8e-28 129.0 117 64.1
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 8.4e-27 125.2 112 64.3
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 6.7e-24 115.5 169 44.4
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 8.2e-22 108.6 130 50.0
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 3.4e-20 103.2 228 30.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 7.6e-20 102.1 118 50.0
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 6.5e-19 99.0 90 60.0
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 3.2e-18 96.7 81 67.9
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 5.5e-18 95.9 174 40.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 4.3e-15 86.3 105 48.6
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 5.7e-15 85.9 105 48.6
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.3e-14 84.7 105 47.6
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.1e-09 67.4 202 30.7
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 1.0e-08 65.1 62 58.1
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.3e-08 64.7 180 27.2


User provided reference genes

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