Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002510 Citrullus lanatus HOM05D006055 ORTHO05D007480 1.3e-177 626.3 317 100.0
Sed0027680 Sechium edule HOM05D006055 ORTHO05D007480 3.3e-125 452.2 286 82.9
MELO3C022277.2 Cucumis melo HOM05D006055 ORTHO05D007480 5.6e-125 451.4 286 82.5
CsaV3_6G008610 Cucumis sativus L. HOM05D006055 ORTHO05D007480 1.8e-123 446.4 286 82.2
Dinv43619 Davidia involucrata HOM05D006055 ORTHO05D007480 3.6e-108 395.6 288 72.2
CSS0024076 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 4.4e-106 388.7 288 71.2
Duzib138G0472 Durio zibethinus HOM05D006055 ORTHO05D007480 7.1e-104 381.3 288 70.1
Thecc.01G394500 Theobroma cacao HOM05D006055 ORTHO05D007480 1.2e-103 380.6 288 69.8
Actinidia12146 Actinidia chinensis HOM05D006055 ORTHO05D007480 1.6e-103 380.2 288 69.4
GSVIVG01018274001 Vitis vinifera HOM05D006055 ORTHO05D007480 3.5e-103 379.0 282 70.2
Cfa011074 Carpinus fangiana HOM05D006055 ORTHO05D007480 4.6e-103 378.6 291 69.8
CANSAT21G1800 Cannabis sativa HOM05D006055 ORTHO05D007480 3.0e-102 375.9 282 70.2
CiPaw.13G026500 Carya illinoinensis HOM05D006055 ORTHO05D007480 3.9e-102 375.6 288 68.4
CANSAT21G1956 Cannabis sativa HOM05D006055 ORTHO05D007480 8.6e-102 374.4 282 70.2
FAN06G3912 Fragaria x ananassa HOM05D006055 ORTHO05D007480 8.6e-102 374.4 286 69.2
Ciclev10021096m.g Citrus clementina HOM05D006055 ORTHO05D007480 1.1e-101 374.0 288 68.8
QL04p030364 Quercus lobata HOM05D006055 ORTHO05D007480 1.5e-101 373.6 282 69.5
TAR375G0976 Trochodendron aralioides HOM05D006055 ORTHO05D007480 1.5e-101 373.6 288 68.8
COL.COLO4_12412 Corchorus olitorius HOM05D006055 ORTHO05D007480 1.9e-101 373.2 288 69.1
FvH4_7g10160 Fragaria vesca HOM05D006055 ORTHO05D007480 1.9e-101 373.2 286 68.9
Manes.05G054600 Manihot esculenta HOM05D006055 ORTHO05D007480 1.9e-101 373.2 288 68.8
TWI14G0600 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 1.9e-101 373.2 282 69.1
FAN06G2084 Fragaria x ananassa HOM05D006055 ORTHO05D007480 7.3e-101 371.3 286 68.9
Hma1.2p1_0009F.1_g005960 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 7.3e-101 371.3 288 66.7
Atru.chr5.130 Acer truncatum HOM05D006055 ORTHO05D007480 1.6e-100 370.2 280 69.3
Gohir.A08G029400 Gossypium hirsutum HOM05D006055 ORTHO05D007480 1.6e-100 370.2 288 69.1
Nn1g00856 Nelumbo nucifera HOM05D006055 ORTHO05D007480 1.6e-100 370.2 288 68.4
Prupe.2G131200 Prunus persica HOM05D006055 ORTHO05D007480 1.6e-100 370.2 288 68.8
vmacro13494 Vaccinium macrocarpon HOM05D006055 ORTHO05D007480 3.6e-100 369.0 288 67.4
PGR004G2446 Punica granatum HOM05D006055 ORTHO05D007480 6.2e-100 368.2 286 68.5
PGR144G0002 Punica granatum HOM05D006055 ORTHO05D007480 6.2e-100 368.2 286 68.5
FAN01G2488 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.8e-99 366.7 286 67.8
Psat0s3739g0040 Pisum sativum HOM05D006055 ORTHO05D007480 4.0e-99 365.5 291 67.4
Sopen01g036070 Solanum pennellii HOM05D006055 ORTHO05D007480 4.0e-99 365.5 288 66.7
Cpa.g.sc101.4 Carica papaya HOM05D006055 ORTHO05D007480 5.2e-99 365.2 281 68.0
FAN10G0847 Fragaria x ananassa HOM05D006055 ORTHO05D007480 5.2e-99 365.2 286 67.5
Nitab4.5_0000920g0150 Nicotiana tabacum HOM05D006055 ORTHO05D007480 5.2e-99 365.2 288 67.4
Aa31LG1G11510 Aethionema arabicum HOM05D006055 ORTHO05D007480 6.9e-99 364.8 295 65.1
Peaxi162Scf00475g00522 Petunia axillaris HOM05D006055 ORTHO05D007480 6.9e-99 364.8 282 68.1
MD07G1108400 Malus domestica HOM05D006055 ORTHO05D007480 8.9e-99 364.4 282 68.1
Nitab4.5_0013736g0020 Nicotiana tabacum HOM05D006055 ORTHO05D007480 8.9e-99 364.4 288 67.0
Eucgr.D01230 Eucalyptus grandis HOM05D006055 ORTHO05D007480 1.2e-98 364.0 281 69.4
Potri.014G047300 Populus trichocarpa HOM05D006055 ORTHO05D007480 2.6e-98 362.8 289 68.5
FAN03G3321 Fragaria x ananassa HOM05D006055 ORTHO05D007480 4.4e-98 362.1 286 66.4
CARHR000230 Cardamine hirsuta HOM05D006055 ORTHO05D007480 5.8e-98 361.7 288 66.0
SGA_v2.0_scaffold116G32294 Striga asiatica HOM05D006055 ORTHO05D007480 5.8e-98 361.7 286 66.4
Lalb_Chr13g0290591 Lupinus albus HOM05D006055 ORTHO05D007480 9.9e-98 360.9 280 67.9
RcHm_v2.0_Chr1g0347871 Rosa chinensis HOM05D006055 ORTHO05D007480 1.3e-97 360.5 286 66.4
EL10Ac1g00759 Beta vulgaris HOM05D006055 ORTHO05D007480 1.7e-97 360.1 276 67.0
Glyma.18G252000 Glycine max HOM05D006055 ORTHO05D007480 1.7e-97 360.1 282 67.7
Solyc01g090280.4 Solanum lycopersicum HOM05D006055 ORTHO05D007480 1.7e-97 360.1 288 66.0
Rhsim07G0035700 Rhododendron simsii HOM05D006055 ORTHO05D007480 2.9e-97 359.4 297 65.0
Sabra14G0034300 Salix brachista HOM05D006055 ORTHO05D007480 3.8e-97 359.0 289 67.5
Thhalv10008126m.g Eutrema salsugineum HOM05D006055 ORTHO05D007480 8.4e-97 357.8 288 64.9
Lj1g0005705 Lotus japonicus HOM05D006055 ORTHO05D007480 8.4e-97 357.8 290 66.9
BcaC07g42339 Brassica carinata HOM05D006055 ORTHO05D007480 1.1e-96 357.5 280 66.1
Ca_08070_v3 Cicer arietinum L. HOM05D006055 ORTHO05D007480 1.1e-96 357.5 279 67.7
Oeu011253.1 Olea europaea HOM05D006055 ORTHO05D007480 1.1e-96 357.5 282 66.7
SGA_v2.0_scaffold43G16538 Striga asiatica HOM05D006055 ORTHO05D007480 1.1e-96 357.5 287 65.5
TPR.G14105 Trifolium pratense HOM05D006055 ORTHO05D007480 1.1e-96 357.5 290 65.9
CAN.G1473.12 Capsicum annuum HOM05D006055 ORTHO05D007480 1.4e-96 357.1 284 65.8
FAN10G2268 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.9e-96 356.7 309 62.5
Ah.16g103830 Amaranthus hybridus HOM05D006055 ORTHO05D007480 3.2e-96 355.9 270 67.4
AL1G10130 Arabidopsis lyrata HOM05D006055 ORTHO05D007480 3.2e-96 355.9 280 65.7
Cc02_g25090 Coffea canephora HOM05D006055 ORTHO05D007480 4.2e-96 355.5 283 66.4
Gohir.D08G040100 Gossypium hirsutum HOM05D006055 ORTHO05D007480 4.2e-96 355.5 329 60.5
Sp1g00170 Schrenkiella parvula HOM05D006055 ORTHO05D007480 4.2e-96 355.5 288 65.6
AUR62013746 Chenopodium quinoa HOM05D006055 ORTHO05D007480 5.4e-96 355.1 286 64.7
Migut.N01738 Erythranthe guttata HOM05D006055 ORTHO05D007480 5.4e-96 355.1 287 64.8
Gorai.004G039000 Gossypium raimondii HOM05D006055 ORTHO05D007480 5.4e-96 355.1 330 60.3
Medtr7g081715 Medicago truncatula HOM05D006055 ORTHO05D007480 5.4e-96 355.1 291 65.6
A09p69350 Brassica napus HOM05D006055 ORTHO05D007480 1.6e-95 353.6 283 66.4
BolC8t52925H Brassica oleracea HOM05D006055 ORTHO05D007480 1.6e-95 353.6 283 66.4
CSS0048269 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 2.1e-95 353.2 261 70.1
Carub.0001s0012 Capsella rubella HOM05D006055 ORTHO05D007480 7.8e-95 351.3 280 65.4
PSO063G7218 Papaver somniferum HOM05D006055 ORTHO05D007480 7.8e-95 351.3 288 65.3
PSO832G3098 Papaver somniferum HOM05D006055 ORTHO05D007480 7.8e-95 351.3 288 65.3
SalBow5G1596 Salvia bowleyana HOM05D006055 ORTHO05D007480 1.3e-94 350.5 310 60.6
BraA09t42280Z Brassica rapa HOM05D006055 ORTHO05D007480 1.7e-94 350.1 281 66.5
BcaC07g42437 Brassica carinata HOM05D006055 ORTHO05D007480 2.3e-94 349.7 283 66.1
Duzib133G1573 Durio zibethinus HOM05D006055 ORTHO05D007480 5.1e-94 348.6 287 66.2
arahy.Tifrunner.gnm1.ann1.JP1X2J Arachis hypogaea HOM05D006055 ORTHO05D007480 8.7e-94 347.8 299 63.9
Glyma.13G187100 Glycine max HOM05D006055 ORTHO05D007480 8.7e-94 347.8 288 65.3
MSTRG.28152 Avicennia marina HOM05D006055 ORTHO05D007480 1.5e-93 347.1 287 64.5
SalBow5G4451 Salvia bowleyana HOM05D006055 ORTHO05D007480 1.9e-93 346.7 320 58.8
AT1G02100 Arabidopsis thaliana HOM05D006055 ORTHO05D007480 3.3e-93 345.9 280 64.3
arahy.Tifrunner.gnm1.ann1.C7FV9J Arachis hypogaea HOM05D006055 ORTHO05D007480 3.3e-93 345.9 299 63.5
Aqoxy7G00862 Aquilegia oxysepala HOM05D006055 ORTHO05D007480 6.2e-92 341.7 277 66.1
ECA240G2571 Erigeron canadensis HOM05D006055 ORTHO05D007480 1.4e-91 340.5 286 65.0
HanXRQChr13g0423211 Helianthus annuus HOM05D006055 ORTHO05D007480 1.2e-90 337.4 287 64.1
Hund17088 Selenicereus undatus HOM05D006055 ORTHO05D007480 1.5e-90 337.0 266 66.2
CDE06G0143 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 2.6e-90 336.3 285 63.9
Lsat_1_v5_gn_3_127241 Lactuca sativa HOM05D006055 ORTHO05D007480 4.5e-90 335.5 287 63.4
Glyma.09G242700 Glycine max HOM05D006055 ORTHO05D007480 2.2e-89 333.2 281 64.1
MD02G1211800 Malus domestica HOM05D006055 ORTHO05D007480 8.4e-89 331.3 260 67.7
Lj9C557T10 Lonicera japonica HOM05D006055 ORTHO05D007480 4.2e-88 328.9 267 68.2
AUR62023405 Chenopodium quinoa HOM05D006055 ORTHO05D007480 1.6e-87 327.0 282 62.8
Os06g0140100 Oryza sativa ssp. japonica HOM05D006055 ORTHO05D007480 1.9e-85 320.1 274 60.9
Phvul.011G190400 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 8.4e-81 304.7 288 59.7
ATR0057G026 Amborella trichopoda HOM05D006055 ORTHO05D007480 1.4e-80 303.9 245 63.7
TWI14G1276 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 1.4e-80 303.9 216 72.7
Hma1.2p1_0009F.1_g005970 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 7.4e-77 291.6 237 63.3
Haze_02842 Corylus avellana HOM05D006055 ORTHO05D007480 6.9e-75 285.0 282 58.2
MBI04_g33722_MAGBIO Magnolia biondii HOM05D006055 ORTHO05D007480 1.2e-71 274.2 264 58.0
Sc02g0003100 Simmondsia chinensis HOM05D006055 ORTHO05D007480 2.7e-71 273.1 245 60.0
Mapoly0013s0063 Marchantia polymorpha HOM05D006055 ORTHO05D007480 1.1e-69 267.7 279 51.6
SMO169G0267 Selaginella moellendorffii HOM05D006055 ORTHO05D007480 4.1e-67 259.2 283 51.2
CBR_g29813 Chara braunii HOM05D006055 ORTHO05D007480 4.5e-66 255.8 260 51.5
Zm00001eb270250 Zea mays HOM05D006055 ORTHO05D007480 4.5e-66 255.8 236 57.6
AagrBONN_evm.TU.Sc2ySwM_344.4855 Anthoceros agrestis HOM05D006055 ORTHO05D007480 3.8e-65 252.7 282 50.4
SEGI_37557 Sequoiadendron giganteum HOM05D006055 ORTHO05D007480 2.1e-63 246.9 213 59.2
CDE06G0088 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 2.2e-60 236.9 191 62.8
Pp3c6_20710 Physcomitrium patens HOM05D006055 ORTHO05D007480 2.4e-59 233.4 280 47.1
C08p54160 Brassica napus HOM05D006055 ORTHO05D007480 2.9e-57 226.5 197 61.9
unitig_578.g16712 Utricularia gibba HOM05D006055 ORTHO05D007480 4.8e-52 209.1 168 64.3
ECA240G0951 Erigeron canadensis HOM05D006055 ORTHO05D007480 1.5e-50 204.1 225 56.4
Actinidia32500 Actinidia chinensis HOM05D006055 ORTHO05D007480 2.6e-42 176.8 162 60.5
Cre04.g229350 Chlamydomonas reinhardtii HOM05D006055 ORTHO05D007480 3.8e-41 172.9 330 35.2
VMungo1127G0075 Vigna mungo HOM05D006055 ORTHO05D007480 3.0e-38 163.3 140 64.3
Gohir.A09G116600 Gossypium hirsutum HOM05D006055 ORTHO05D007480 3.8e-33 146.4 143 57.3
HPP92_022088 Vanilla planifolia HOM05D006055 ORTHO05D007480 2.0e-29 134.0 129 55.8
SHI13615 Sapria himalayana HOM05D006055 ORTHO05D007480 4.4e-29 132.9 134 52.2
Gohir.D08G159633 Gossypium hirsutum HOM05D006055 ORTHO05D007480 2.3e-25 120.6 84 69.0
MCO09G792 Micromonas commoda HOM05D006055 ORTHO05D007480 3.4e-21 106.7 222 33.8
Zm00001eb438620 Zea mays HOM05D006055 ORTHO05D007480 9.2e-19 98.6 97 53.6
SHI13613 Sapria himalayana HOM05D006055 ORTHO05D007480 1.5e-16 91.3 69 66.7
PRCOL_00000228 Prasinoderma coloniale HOM05D006055 ORTHO05D007480 1.4e-14 84.7 231 28.6
Phvul.008G046701 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 7.5e-13 79.0 50 80.0


User provided reference genes

Program Settings