Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 8.5e-257 889.8 440 100.0
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 7.8e-218 760.4 447 86.4
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 1.3e-212 743.0 445 83.6
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.4e-198 695.7 412 86.4
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 5.1e-193 677.9 447 75.2
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.4e-190 669.1 447 73.8
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 3.1e-190 668.7 447 74.0
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 6.9e-190 667.5 447 73.4
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.5e-189 666.4 447 73.6
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 2.0e-189 666.0 430 74.9
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-188 663.3 438 74.4
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.9e-188 661.4 447 73.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 1.4e-187 659.8 447 74.0
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 1.9e-187 659.4 447 72.9
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 4.2e-187 658.3 445 73.5
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 4.2e-187 658.3 448 73.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.6e-186 656.4 445 73.0
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 2.7e-186 655.6 447 72.9
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 5.1e-185 651.4 447 72.9
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 5.1e-185 651.4 446 71.3
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 8.7e-185 650.6 448 72.1
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 8.7e-185 650.6 430 73.0
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.9e-184 649.4 447 73.2
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.9e-184 649.4 450 72.4
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 3.3e-184 648.7 432 73.4
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 4.3e-184 648.3 448 71.7
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 9.6e-184 647.1 472 69.5
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.6e-183 646.4 446 72.9
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.8e-183 645.6 447 73.2
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 4.8e-183 644.8 432 72.9
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 4.8e-183 644.8 430 73.5
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 6.2e-183 644.4 432 72.9
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 3.1e-182 642.1 448 72.1
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 4.0e-182 641.7 452 69.7
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 9.0e-182 640.6 443 70.2
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.2e-181 640.2 428 72.4
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 7.6e-181 637.5 415 75.7
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 9.9e-181 637.1 428 72.0
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 3.8e-180 635.2 452 68.8
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 6.4e-180 634.4 448 70.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.1e-179 633.6 434 70.3
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.1e-179 633.6 428 71.5
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 3.2e-179 632.1 447 70.2
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 4.2e-179 631.7 449 70.2
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 4.2e-179 631.7 462 68.6
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 5.4e-179 631.3 447 70.2
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.4e-179 631.3 451 68.7
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.6e-178 629.8 451 70.1
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.6e-178 629.8 446 70.2
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.1e-178 629.4 478 66.5
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 4.6e-178 628.2 443 70.2
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 6.0e-178 627.9 452 68.1
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 7.9e-178 627.5 427 72.1
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 3.9e-177 625.2 417 73.6
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 6.7e-177 624.4 429 71.6
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 8.7e-177 624.0 432 69.2
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 1.1e-176 623.6 466 67.2
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 9.6e-176 620.5 453 68.0
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 1.3e-175 620.2 447 67.6
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.6e-175 619.8 447 68.0
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.6e-175 619.8 448 67.6
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.7e-175 618.6 450 67.3
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 3.7e-175 618.6 450 69.3
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 4.8e-175 618.2 440 69.3
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 6.2e-175 617.8 451 67.4
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 4.0e-174 615.1 447 67.3
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 9.0e-174 614.0 432 68.1
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 4.5e-173 611.7 427 68.9
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 5.8e-173 611.3 437 68.0
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 7.6e-173 610.9 451 65.4
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 1.3e-172 610.1 449 67.5
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.2e-172 609.4 448 66.3
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 8.4e-172 607.4 449 66.8
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.1e-171 607.1 432 68.1
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.4e-171 606.7 443 65.5
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.4e-171 606.7 448 65.8
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.5e-171 605.9 447 67.1
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 3.2e-171 605.5 449 67.0
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 5.5e-171 604.7 432 67.6
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 7.1e-171 604.4 427 67.7
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 9.3e-171 604.0 447 66.2
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 3.5e-170 602.1 468 63.2
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.8e-169 599.7 477 62.3
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 1.1e-168 597.0 463 64.4
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.9e-168 596.3 448 65.8
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 4.3e-168 595.1 448 65.8
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.6e-167 593.2 448 67.9
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 2.1e-167 592.8 448 66.3
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 4.0e-166 588.6 481 64.4
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 4.0e-166 588.6 450 66.7
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 7.1e-163 577.8 447 66.2
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 7.1e-163 577.8 498 62.2
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 1.8e-161 573.2 443 64.3
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.5e-160 569.3 406 70.7
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 3.3e-160 568.9 404 70.0
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 6.9e-158 561.2 481 58.8
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 3.9e-153 545.4 384 67.2
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 1.1e-152 543.9 412 65.0
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 3.7e-151 538.9 430 62.8
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 9.4e-147 524.2 360 71.7
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.4e-142 510.4 447 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 1.7e-140 503.4 430 58.1
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.1e-139 500.7 461 58.1
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.2e-138 497.3 430 57.0
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.2e-138 497.3 448 58.0
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.6e-138 496.9 428 57.7
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 7.0e-134 481.5 425 57.4
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.6e-133 480.3 322 72.0
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 4.7e-130 468.8 442 53.2
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 4.8e-119 432.2 246 80.5
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 8.6e-116 421.4 454 51.5
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 1.0e-100 371.3 435 43.2
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-100 370.9 338 59.2
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.9e-95 353.2 457 48.1
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.6e-93 345.9 425 44.2
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 6.0e-85 318.9 180 83.3
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.9e-78 297.4 315 52.1
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 1.5e-75 287.7 478 34.9
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 8.1e-58 228.8 307 44.0
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 4.9e-55 219.5 195 59.0
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 7.9e-53 212.2 108 88.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 3.9e-44 183.3 348 35.6
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 7.4e-43 179.1 361 34.9
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 9.0e-41 172.2 109 78.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 5.5e-38 162.9 137 62.0
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 3.2e-30 137.1 101 66.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 6.1e-29 132.9 82 68.3
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 5.7e-27 126.3 127 49.6
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.5e-22 111.7 67 68.7
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-21 108.6 119 56.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.6e-21 108.2 83 63.9
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 3.6e-21 107.1 192 32.3
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 8.8e-20 102.4 71 66.2
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.8e-18 96.7 104 52.9
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.8e-17 94.7 67 62.7
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 5.3e-17 93.2 101 50.5
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 5.5e-14 83.2 67 61.2


User provided reference genes

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