Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001760 Citrullus lanatus HOM05D006411 ORTHO05D007563 3.5e-103 378.3 183 100.0
Sed0009782 Sechium edule HOM05D006411 ORTHO05D007563 5.2e-83 311.2 182 83.5
CsaV3_6G007790 Cucumis sativus L. HOM05D006411 ORTHO05D007563 1.1e-80 303.5 182 81.9
MELO3C022353.2 Cucumis melo HOM05D006411 ORTHO05D007563 1.4e-72 276.6 147 87.8
Prupe.1G216800 Prunus persica HOM05D006411 ORTHO05D007563 6.6e-62 241.1 176 67.0
TWI18G1006 Tripterygium wilfordii HOM05D006411 ORTHO05D007563 3.3e-61 238.8 178 64.6
QL03p049668 Quercus lobata HOM05D006411 ORTHO05D007563 1.2e-60 236.9 180 62.8
Thecc.02G193900 Theobroma cacao HOM05D006411 ORTHO05D007563 1.1e-59 233.8 181 60.2
Atru.chr12.1401 Acer truncatum HOM05D006411 ORTHO05D007563 2.3e-59 232.6 178 61.2
Duzib132G0393 Durio zibethinus HOM05D006411 ORTHO05D007563 3.1e-59 232.3 182 61.0
RcHm_v2.0_Chr4g0429021 Rosa chinensis HOM05D006411 ORTHO05D007563 4.0e-59 231.9 177 63.3
GSVIVG01004943001 Vitis vinifera HOM05D006411 ORTHO05D007563 5.2e-59 231.5 178 61.2
Dinv09212 Davidia involucrata HOM05D006411 ORTHO05D007563 1.2e-58 230.3 174 61.5
MD16G1129800 Malus domestica HOM05D006411 ORTHO05D007563 1.5e-58 229.9 176 63.6
Haze_12492 Corylus avellana HOM05D006411 ORTHO05D007563 2.6e-58 229.2 179 62.6
TAR371G0942 Trochodendron aralioides HOM05D006411 ORTHO05D007563 2.6e-58 229.2 180 61.7
MD13G1129600 Malus domestica HOM05D006411 ORTHO05D007563 3.4e-58 228.8 176 65.3
Cfa009441 Carpinus fangiana HOM05D006411 ORTHO05D007563 4.4e-58 228.4 179 63.1
FvH4_4g22791 Fragaria vesca HOM05D006411 ORTHO05D007563 4.4e-58 228.4 177 61.6
Manes.09G187200 Manihot esculenta HOM05D006411 ORTHO05D007563 4.4e-58 228.4 181 63.0
FAN17G2521 Fragaria x ananassa HOM05D006411 ORTHO05D007563 1.7e-57 226.5 177 61.0
Sabra03G0118900 Salix brachista HOM05D006411 ORTHO05D007563 1.7e-57 226.5 177 61.0
FAN12G0338 Fragaria x ananassa HOM05D002780 ORTHO05D003254 2.2e-57 226.1 177 61.0
Gorai.002G163700 Gossypium raimondii HOM05D006411 ORTHO05D007563 1.4e-56 223.4 182 58.8
RhsimUnG0101400 Rhododendron simsii HOM05D006411 ORTHO05D007563 3.2e-56 222.2 177 58.8
Gohir.A01G141100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 1.2e-55 220.3 182 58.2
Cc11_g15120 Coffea canephora HOM05D006411 ORTHO05D007563 4.6e-55 218.4 180 58.3
CANSAT01G2250 Cannabis sativa HOM05D006411 ORTHO05D007563 1.1e-53 213.8 179 61.5
PGR119G0335 Punica granatum HOM05D006411 ORTHO05D007563 1.1e-53 213.8 181 58.6
Potri.003G163500 Populus trichocarpa HOM05D006411 ORTHO05D007563 1.5e-53 213.4 143 66.4
Actinidia34001 Actinidia chinensis HOM05D006411 ORTHO05D007563 1.6e-52 209.9 177 57.6
Oeu044509.2 Olea europaea HOM05D006411 ORTHO05D007563 2.1e-52 209.5 183 56.8
Ciclev10005785m.g Citrus clementina HOM05D006411 ORTHO05D007563 8.1e-52 207.6 181 56.4
vmacro10313 Vaccinium macrocarpon HOM05D006411 ORTHO05D007563 1.1e-51 207.2 189 55.0
Actinidia09598 Actinidia chinensis HOM05D006411 ORTHO05D007563 1.4e-51 206.8 176 56.2
Ah.03g135590 Amaranthus hybridus HOM05D006411 ORTHO05D007563 4.0e-51 205.3 182 57.7
Solyc12g016210.2 Solanum lycopersicum HOM05D006411 ORTHO05D007563 1.5e-50 203.4 180 53.9
Sopen12g008000 Solanum pennellii HOM05D006411 ORTHO05D007563 2.0e-50 203.0 180 53.9
Lsat_1_v5_gn_2_17720 Lactuca sativa HOM05D006411 ORTHO05D007563 1.3e-49 200.3 181 51.9
ECA238G0094 Erigeron canadensis HOM05D006411 ORTHO05D007563 2.2e-49 199.5 185 53.0
CSS0035608 Camellia sinensis var. sinensis HOM05D006411 ORTHO05D007563 3.8e-49 198.7 177 55.4
Nn1g07843 Nelumbo nucifera HOM05D006411 ORTHO05D007563 6.4e-49 198.0 188 52.1
CAN.G529.4 Capsicum annuum HOM05D006411 ORTHO05D007563 1.9e-48 196.4 180 52.2
Nn3g20757 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.9e-48 196.4 188 52.1
MSTRG.461 Avicennia marina HOM05D006411 ORTHO05D007563 2.4e-48 196.1 177 55.4
AUR62031618 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.4e-48 196.1 180 56.7
HanXRQChr17g0559141 Helianthus annuus HOM05D006411 ORTHO05D007563 5.4e-48 194.9 181 51.4
THA.LOC104808624 Tarenaya hassleriana HOM05D006411 ORTHO05D007563 9.2e-48 194.1 178 53.4
Aqoxy5G03164 Aquilegia oxysepala HOM05D006411 ORTHO05D007563 2.7e-47 192.6 178 54.5
SalBow2G2156 Salvia bowleyana HOM05D006411 ORTHO05D007563 2.7e-47 192.6 181 51.4
SalBow7G1895 Salvia bowleyana HOM05D006411 ORTHO05D007563 2.7e-47 192.6 183 50.8
SGA_v2.0_scaffold80G25942 Striga asiatica HOM05D006411 ORTHO05D007563 3.5e-47 192.2 178 55.1
Aa31LG8G9800 Aethionema arabicum HOM05D006411 ORTHO05D007563 4.6e-47 191.8 178 53.4
Sp3g20930 Schrenkiella parvula HOM05D006411 ORTHO05D007563 6.0e-47 191.4 174 55.2
Lj3g0004314 Lotus japonicus HOM05D006411 ORTHO05D007563 7.8e-47 191.0 184 53.8
Nn2g15361 Nelumbo nucifera HOM05D006411 ORTHO05D007563 7.8e-47 191.0 186 52.2
Nitab4.5_0002671g0040 Nicotiana tabacum HOM05D006411 ORTHO05D007563 1.3e-46 190.3 183 54.6
Nitab4.5_0003020g0130 Nicotiana tabacum HOM05D006411 ORTHO05D007563 1.3e-46 190.3 185 53.0
Thhalv10021467m.g Eutrema salsugineum HOM05D006411 ORTHO05D007563 2.3e-46 189.5 174 55.7
VMungo1127G0609 Vigna mungo HOM05D006411 ORTHO05D007563 3.0e-46 189.1 181 53.0
EL10Ac6g13598 Beta vulgaris HOM05D006411 ORTHO05D007563 3.9e-46 188.7 184 53.3
TPR.G28023 Trifolium pratense HOM05D006411 ORTHO05D007563 3.9e-46 188.7 185 53.0
Glyma.11G109300 Glycine max HOM05D006411 ORTHO05D007563 5.1e-46 188.3 185 51.4
Sc11g0000150 Simmondsia chinensis HOM05D006411 ORTHO05D007563 5.1e-46 188.3 135 65.9
Ca_18949_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 6.6e-46 188.0 174 54.6
Ca_29765_v3 Cicer arietinum L. HOM05D001211 ORTHO05D001084 6.6e-46 188.0 174 54.6
BcaB06g26470 Brassica carinata HOM05D006411 ORTHO05D007563 1.9e-45 186.4 174 52.9
AT3G23255 Arabidopsis thaliana HOM05D006411 ORTHO05D007563 3.3e-45 185.7 180 54.4
Migut.K01066 Erythranthe guttata HOM05D006411 ORTHO05D007563 4.3e-45 185.3 179 53.6
C07p14190 Brassica napus HOM05D006411 ORTHO05D007563 1.2e-44 183.7 174 54.6
BolC7t41915H Brassica oleracea HOM05D006411 ORTHO05D007563 1.2e-44 183.7 174 54.6
AL3G37910 Arabidopsis lyrata HOM05D006411 ORTHO05D007563 2.8e-44 182.6 176 53.4
AUR62010749 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.8e-44 182.6 149 61.1
Os10g0466100 Oryza sativa ssp. japonica HOM05D006411 ORTHO05D007563 8.1e-44 181.0 180 51.7
Psat7g169880 Pisum sativum HOM05D006411 ORTHO05D007563 5.2e-43 178.3 174 52.3
SHI04127 Sapria himalayana HOM05D006411 ORTHO05D007563 9.0e-43 177.6 182 50.5
Gohir.D01G132100 Gossypium hirsutum HOM05D006411 ORTHO05D007563 2.0e-42 176.4 125 64.8
AUR62020519 Chenopodium quinoa HOM05D006411 ORTHO05D007563 2.6e-42 176.0 141 61.7
Zm00001eb222220 Zea mays HOM05D006411 ORTHO05D007563 2.6e-42 176.0 179 49.2
Hund06130 Selenicereus undatus HOM05D006411 ORTHO05D007563 3.4e-42 175.6 195 47.7
ATR0751G011 Amborella trichopoda HOM05D006411 ORTHO05D006707 5.8e-42 174.9 148 55.4
A07p09200 Brassica napus HOM05D006411 ORTHO05D007563 1.7e-41 173.3 176 52.8
BraA07t28715Z Brassica rapa HOM05D006411 ORTHO05D007563 1.7e-41 173.3 181 51.9
Carub.0003s2350 Capsella rubella HOM05D006411 ORTHO05D007563 6.4e-41 171.4 176 52.3
CARHR099210 Cardamine hirsuta HOM05D006411 ORTHO05D007563 9.3e-40 167.5 181 49.2
SEGI_29411 Sequoiadendron giganteum HOM05D006411 ORTHO05D007563 2.1e-39 166.4 179 47.5
PSO765G0094 Papaver somniferum HOM05D006411 ORTHO05D007563 6.0e-39 164.9 215 43.7
PSO349G0017 Papaver somniferum HOM05D006411 ORTHO05D007563 7.8e-39 164.5 215 43.3
CiPaw.05G102200 Carya illinoinensis HOM05D006411 ORTHO05D007563 3.0e-38 162.5 128 63.3
HPP92_007040 Vanilla planifolia HOM05D006411 ORTHO05D007563 8.7e-38 161.0 181 49.2
FvH4_4g07260 Fragaria vesca HOM05D006411 ORTHO05D007563 1.1e-35 154.1 135 56.3
Carub.0137s0001 Capsella rubella HOM05D006411 ORTHO05D007563 1.5e-34 150.2 145 52.4
Lalb_Chr19g0140051 Lupinus albus HOM05D006411 ORTHO05D007563 2.0e-34 149.8 184 46.2
Nn3g17917 Nelumbo nucifera HOM05D006411 ORTHO05D007563 2.0e-34 149.8 158 48.7
Lj5A251G70 Lonicera japonica HOM05D006411 ORTHO05D007563 2.6e-34 149.4 175 46.3
Phvul.011G018400 Phaseolus vulgaris HOM05D006411 ORTHO05D007563 6.4e-33 144.8 128 54.7
Pp3c2_21820 Physcomitrium patens HOM05D006411 ORTHO05D007563 2.4e-32 142.9 181 42.0
COL.COLO4_21790 Corchorus olitorius HOM05D006411 ORTHO05D007563 3.2e-32 142.5 174 46.0
arahy.Tifrunner.gnm1.ann1.ZM7ZD1 Arachis hypogaea HOM05D006411 ORTHO05D007563 1.6e-31 140.2 192 42.2
Medtr4g078190 Medicago truncatula HOM05D006411 ORTHO05D007563 4.0e-27 125.6 98 59.2
AUR62015683 Chenopodium quinoa HOM05D006411 ORTHO05D007563 3.9e-22 109.0 64 75.0
Lj5g0007299 Lotus japonicus HOM05D006411 ORTHO05D007563 8.7e-22 107.8 64 71.9
Mapoly0164s0017 Marchantia polymorpha HOM05D006411 ORTHO05D007563 2.5e-21 106.3 138 40.6
AagrBONN_evm.TU.Sc2ySwM_344.2329 Anthoceros agrestis HOM05D014047 ORTHO05D007563 2.4e-19 99.8 175 35.4
CBR_g41204 Chara braunii HOM05D006411 ORTHO05D007563 1.2e-18 97.4 182 34.1
Nn7g35834 Nelumbo nucifera HOM05D006411 ORTHO05D007563 1.5e-18 97.1 69 62.3
Dinv15386 Davidia involucrata HOM05D006411 ORTHO05D007563 3.2e-16 89.4 74 56.8
SMO119G0262 Selaginella moellendorffii HOM05D006411 ORTHO05D007563 7.1e-16 88.2 112 42.0
SGA_v2.0_scaffold360G49865 Striga asiatica HOM05D020805 ORTHO05D007563 1.1e-11 74.3 73 49.3
Peaxi162Scf00217g00911 Petunia axillaris HOM05D006411 ORTHO05D007563 7.7e-10 68.2 147 31.3
Glyma.12G016051 Glycine max HOM05D006411 ORTHO05D007563 1.1e-08 64.3 76 44.7
MBI02_g46060_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 1.1e-08 64.3 33 75.8
SHI32270 Sapria himalayana HOM05D006411 ORTHO05D007563 2.5e-08 63.2 58 53.4
MBI04_g21533_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 3.2e-08 62.8 33 72.7
MBI05_g34743_MAGBIO Magnolia biondii HOM05D006411 ORTHO05D007563 5.5e-08 62.0 33 72.7


User provided reference genes

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