Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 9.8e-147 523.5 270 100.0
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.4e-129 466.5 292 84.9
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 4.1e-129 464.9 292 84.9
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 3.0e-111 405.6 293 75.1
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 6.2e-93 344.7 288 63.2
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 8.2e-93 344.4 293 64.2
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 2.4e-92 342.8 293 64.5
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 4.1e-92 342.0 293 63.8
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 6.9e-92 341.3 270 68.1
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-91 340.1 292 64.0
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.8e-90 335.5 298 62.4
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 3.2e-89 332.4 294 65.0
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 1.6e-88 330.1 285 64.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 1.6e-88 330.1 264 67.4
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 2.1e-88 329.7 294 60.5
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.0e-87 327.4 287 62.7
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.8e-87 326.6 244 70.1
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.3e-87 326.2 244 70.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.9e-87 325.5 272 63.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 3.9e-87 325.5 286 62.6
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.5e-86 322.8 288 61.1
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 3.3e-86 322.4 293 61.4
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.3e-86 322.0 277 62.5
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 5.7e-86 321.6 268 65.3
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 7.4e-86 321.2 287 62.4
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 6.3e-85 318.2 243 68.7
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 8.2e-85 317.8 289 61.2
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 1.1e-84 317.4 250 66.8
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.4e-84 317.0 241 69.3
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 2.4e-84 316.2 253 66.0
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.1e-84 315.5 304 59.2
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.3e-84 315.1 304 59.2
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 9.0e-84 314.3 283 60.4
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 1.2e-83 313.9 246 67.1
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.2e-83 313.9 274 62.4
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 2.6e-83 312.8 267 62.5
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 4.5e-83 312.0 250 67.2
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 5.9e-83 311.6 243 67.1
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 5.9e-83 311.6 332 55.4
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 7.7e-83 311.2 304 57.2
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.3e-82 310.5 277 63.2
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 2.9e-82 309.3 252 64.7
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 1.1e-81 307.4 248 63.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 1.4e-81 307.0 301 58.1
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.4e-81 307.0 248 63.3
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 1.4e-81 307.0 250 66.4
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 4.2e-81 305.4 229 69.9
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 7.2e-81 304.7 272 61.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 9.4e-81 304.3 236 67.8
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 9.4e-81 304.3 246 63.4
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 2.1e-80 303.1 248 64.1
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.1e-80 303.1 244 65.2
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 2.1e-80 303.1 260 65.0
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 6.1e-80 301.6 239 66.9
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 6.1e-80 301.6 259 61.4
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 7.9e-80 301.2 268 60.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 7.9e-80 301.2 272 63.2
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.0e-79 300.8 283 59.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 2.3e-79 299.7 284 58.8
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 3.9e-79 298.9 288 58.0
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 5.1e-79 298.5 283 58.7
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 5.1e-79 298.5 244 64.8
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 6.7e-79 298.1 256 63.7
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.5e-78 297.0 284 58.5
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.5e-78 297.0 254 63.0
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 1.5e-78 297.0 241 64.7
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 4.3e-78 295.4 267 61.0
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 7.4e-78 294.7 284 58.5
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 7.4e-78 294.7 246 62.6
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 1.3e-77 293.9 234 65.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 1.7e-77 293.5 283 57.6
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 2.2e-77 293.1 284 58.1
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 2.2e-77 293.1 343 52.2
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.7e-77 292.4 235 65.1
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 4.8e-77 292.0 281 59.1
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 6.3e-77 291.6 219 69.4
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 6.3e-77 291.6 247 61.1
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.1e-76 290.8 227 65.6
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.1e-76 290.8 227 66.1
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.4e-76 290.4 247 60.7
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 1.8e-76 290.0 284 56.7
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 4.1e-76 288.9 262 60.7
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 5.3e-76 288.5 276 56.5
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 6.9e-76 288.1 275 57.5
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.2e-75 287.3 249 62.7
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.2e-75 287.3 285 55.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 4.5e-75 285.4 248 61.7
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 7.7e-75 284.6 250 59.6
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 4.2e-73 278.9 254 59.8
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 5.5e-73 278.5 260 60.0
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 6.1e-72 275.0 228 61.8
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 3.7e-69 265.8 216 65.7
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.1e-68 264.2 235 60.0
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.5e-67 260.4 206 68.0
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 2.0e-67 260.0 250 59.2
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.5e-67 259.2 212 64.6
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.0e-66 257.7 174 74.7
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 1.0e-66 257.7 269 51.7
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 2.3e-63 246.5 226 61.5
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 2.0e-62 243.4 243 50.6
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 7.4e-62 241.5 233 54.1
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.7e-61 240.4 208 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.4e-60 237.3 269 49.4
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.8e-60 236.9 204 63.7
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.8e-58 229.2 206 62.1
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 3.2e-57 226.1 228 52.2
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 5.5e-49 198.7 261 47.5
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.1e-44 184.5 147 67.3
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 4.3e-33 146.0 225 40.4
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 4.3e-33 146.0 216 42.6
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.4e-31 141.0 148 54.7
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 5.2e-31 139.0 110 60.9
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 5.0e-26 122.5 214 36.4
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 5.8e-22 109.0 136 48.5
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.9e-21 105.9 83 61.4
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.7e-18 97.4 68 63.2
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 8.1e-16 88.6 68 66.2
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.4e-15 87.8 121 43.0
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.8e-15 87.4 86 58.1
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 6.8e-15 85.5 63 60.3
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 8.4e-13 78.6 116 44.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 8.4e-13 78.6 69 62.3
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 3.5e-11 73.2 67 61.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.3e-09 66.6 56 62.5
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 1.6e-08 64.3 43 67.4
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 8.1e-08 62.0 167 34.1
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.8e-07 60.8 86 41.9
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 5.2e-07 59.3 91 38.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.0e-06 57.4 78 43.6


User provided reference genes

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