Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 8.8e-138 494.2 371 100.0
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 4.4e-73 279.3 276 63.8
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 9.6e-68 261.5 376 66.8
Sed0022884 Sechium edule HOM05D007706 ORTHO05D009593 9.7e-28 128.6 215 47.4
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 3.4e-17 93.6 295 36.3
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.0e-16 92.0 289 30.8
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 8.5e-16 89.0 286 30.1
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 3.2e-15 87.0 295 34.6
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 7.2e-15 85.9 320 34.1
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 9.4e-15 85.5 292 36.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.1e-14 84.3 306 34.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 4.7e-14 83.2 303 31.7
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 4.7e-14 83.2 295 36.9
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 7.9e-14 82.4 297 34.7
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 1.0e-13 82.0 291 34.7
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.0e-13 82.0 283 31.1
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.4e-13 81.6 278 32.0
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.8e-13 81.3 318 31.4
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.8e-13 81.3 305 31.5
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.3e-13 80.9 340 30.0
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 3.0e-13 80.5 280 32.1
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.0e-13 80.5 280 32.1
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 5.2e-13 79.7 306 33.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 8.8e-13 79.0 332 27.7
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 2.6e-12 77.4 302 30.5
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 3.3e-12 77.0 280 32.1
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 4.4e-12 76.6 294 32.0
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 5.7e-12 76.3 303 40.9
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 7.4e-12 75.9 309 37.2
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 9.7e-12 75.5 322 37.0
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 9.7e-12 75.5 298 31.2
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.3e-11 75.1 341 33.1
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.3e-11 75.1 320 37.8
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.7e-11 74.7 288 33.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 8.2e-11 72.4 299 33.4
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 8.2e-11 72.4 285 34.0
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 1.4e-10 71.6 284 28.9
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.4e-10 71.6 283 29.7
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.8e-10 71.2 297 31.6
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.8e-10 71.2 231 33.3
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.8e-10 71.2 231 33.3
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 1.8e-10 71.2 310 32.3
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 1.8e-10 71.2 302 29.8
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.4e-10 70.9 318 33.0
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 2.4e-10 70.9 302 30.1
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.4e-10 70.9 293 29.7
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 3.1e-10 70.5 334 33.8
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 9.1e-10 68.9 296 31.4
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.2e-09 68.6 301 29.6
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 1.6e-09 68.2 291 29.9
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 2.0e-09 67.8 304 33.9
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 2.6e-09 67.4 298 28.5
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 2.6e-09 67.4 289 30.1
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.5e-09 67.0 298 31.5
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 7.7e-09 65.9 293 31.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.7e-08 64.7 303 30.4
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.7e-08 64.7 295 30.2
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.7e-08 64.7 296 31.8
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 2.2e-08 64.3 290 28.6
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 2.2e-08 64.3 289 28.0
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 2.2e-08 64.3 303 29.7
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 3.8e-08 63.5 289 28.0
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 8.5e-08 62.4 293 28.7
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.1e-07 62.0 223 28.3
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.5e-07 61.6 289 29.1
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.9e-07 61.2 301 31.6
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 3.2e-07 60.5 290 31.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.2e-07 60.5 280 28.6
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 5.5e-07 59.7 307 35.2
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 7.2e-07 59.3 309 31.7
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.2e-06 58.5 301 31.6
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.6e-06 58.2 231 31.2
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 2.7e-06 57.4 333 32.4
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 3.6e-06 57.0 286 30.1
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 8.0e-06 55.8 204 27.0


User provided reference genes

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