Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 1.7e-260 902.1 464 100.0
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 8.5e-215 750.4 402 94.3
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.1e-203 713.4 401 89.5
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.8e-202 708.8 410 88.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.7e-192 674.1 401 83.5
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.5e-190 669.8 401 82.5
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 1.2e-189 666.8 401 82.3
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.7e-189 664.8 401 82.0
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 4.7e-189 664.8 401 82.3
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.8e-188 662.9 401 81.5
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 2.3e-188 662.5 402 82.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 4.0e-188 661.8 401 82.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 1.2e-187 660.2 401 82.0
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 5.7e-187 657.9 401 81.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 1.3e-186 656.8 401 81.3
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 1.3e-186 656.8 401 82.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 1.7e-186 656.4 401 82.5
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.7e-186 656.4 401 82.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 2.2e-186 656.0 401 81.3
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 6.3e-186 654.4 401 80.5
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 8.3e-186 654.1 402 81.6
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.1e-185 653.7 397 80.9
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 2.4e-185 652.5 401 80.3
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 3.1e-185 652.1 398 81.7
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 4.1e-185 651.7 401 80.3
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 9.1e-185 650.6 401 81.0
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 9.1e-185 650.6 401 80.0
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.2e-184 650.2 401 80.3
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.0e-184 649.4 402 80.6
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.5e-184 648.7 401 80.0
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 5.9e-184 647.9 397 80.4
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 7.7e-184 647.5 402 80.6
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 1.0e-183 647.1 401 80.8
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.0e-183 647.1 401 79.6
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 1.3e-183 646.7 393 83.2
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.3e-183 646.7 402 79.9
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 3.8e-183 645.2 406 79.6
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 6.6e-183 644.4 401 80.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 1.9e-182 642.9 401 80.3
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 5.6e-182 641.3 402 79.6
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 7.2e-182 641.0 401 80.3
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.2e-181 640.2 402 79.1
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.1e-181 639.4 402 79.9
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 2.8e-181 639.0 401 78.1
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 3.6e-181 638.6 402 79.9
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 8.0e-181 637.5 401 78.8
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 5.2e-180 634.8 401 77.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 6.8e-180 634.4 425 74.6
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 6.8e-180 634.4 401 78.1
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.5e-179 630.9 394 79.7
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 7.5e-179 630.9 403 76.4
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 9.8e-179 630.6 398 78.4
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 9.8e-179 630.6 398 78.4
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 6.4e-178 627.9 433 74.6
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 8.3e-178 627.5 389 80.5
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 1.1e-177 627.1 409 76.5
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.4e-177 626.7 420 74.3
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 3.2e-177 625.5 396 77.5
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.2e-177 625.5 399 78.7
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 4.1e-177 625.2 404 75.5
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 2.7e-176 622.5 365 83.6
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.7e-176 622.5 401 77.6
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 4.6e-176 621.7 393 77.4
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.3e-175 620.2 403 75.4
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.3e-175 620.2 402 77.1
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 2.3e-175 619.4 402 76.6
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.9e-175 618.6 401 75.6
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.9e-175 618.6 404 74.8
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.9e-175 618.6 404 75.2
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 6.6e-175 617.8 403 75.2
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 6.6e-175 617.8 399 76.7
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.5e-174 616.7 401 76.6
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.9e-174 616.3 403 75.2
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-174 615.9 401 75.3
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 2.5e-174 615.9 402 75.1
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 4.3e-174 615.1 401 75.6
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 6.2e-173 611.3 403 75.4
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 6.2e-173 611.3 404 74.5
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 8.0e-173 610.9 397 76.8
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 1.8e-172 609.8 402 74.9
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 1.8e-172 609.8 402 76.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 2.3e-172 609.4 399 75.4
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 2.3e-172 609.4 402 75.4
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 3.1e-172 609.0 401 74.8
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 5.2e-172 608.2 401 74.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 5.2e-172 608.2 401 74.6
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 8.9e-172 607.4 395 77.5
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 8.9e-172 607.4 402 75.9
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.2e-171 607.1 399 75.2
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 3.4e-171 605.5 401 74.1
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 4.4e-171 605.1 399 74.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 7.5e-171 604.4 404 74.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 9.8e-171 604.0 400 74.0
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-170 603.6 400 74.0
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 1.7e-170 603.2 398 74.4
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 1.7e-170 603.2 401 74.1
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.4e-169 599.4 391 75.7
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 3.2e-169 599.0 404 73.0
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.0e-167 592.4 390 75.4
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.3e-166 589.0 405 74.3
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 3.3e-166 589.0 400 75.0
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 9.5e-166 587.4 362 80.7
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.8e-165 585.9 497 62.8
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 8.1e-165 584.3 418 72.0
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.4e-164 583.6 363 78.5
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 5.2e-164 581.6 445 67.9
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 7.5e-163 577.8 554 57.6
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.9e-162 575.9 453 69.1
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.4e-161 572.8 445 67.2
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.4e-161 572.8 403 69.7
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 3.0e-159 565.8 401 71.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.3e-156 556.2 354 79.4
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.3e-143 513.1 328 79.0
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.6e-141 506.9 309 79.0
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 3.8e-138 495.7 292 81.2
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.5e-134 483.0 329 75.1
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 2.1e-133 479.9 316 76.9
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 3.5e-120 436.0 398 56.5
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.1e-117 426.8 343 65.6
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 6.3e-117 425.2 377 57.3
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 5.3e-116 422.2 262 81.3
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 3.8e-114 416.0 365 54.8
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 5.1e-111 405.6 340 56.2
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.1e-100 371.3 349 53.3
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 4.4e-94 349.4 236 77.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 9.7e-86 321.6 226 70.8
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.5e-81 305.8 289 50.2
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.7e-77 294.3 334 45.5
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.6e-67 261.2 366 39.3
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 3.7e-61 240.0 172 72.7
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 6.4e-61 239.2 229 57.6
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 2.4e-60 237.3 350 40.0
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 5.9e-59 232.6 205 64.9
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 2.0e-54 217.6 267 49.1
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 3.2e-44 183.7 98 90.8
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 7.3e-33 146.0 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.6e-33 145.6 82 85.4
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.2e-29 134.4 81 82.7
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.2e-28 130.6 131 56.5
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.7e-21 108.2 105 51.4
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 3.5e-19 100.5 65 69.2
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.1e-17 95.5 62 74.2
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 2.7e-11 74.3 62 61.3
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 9.0e-07 59.3 46 67.4
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 1.5e-06 58.5 266 25.9
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 2.6e-06 57.8 54 59.3
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 3.4e-06 57.4 261 26.4
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 4.5e-06 57.0 264 24.2
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 4.5e-06 57.0 331 25.7
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 7.6e-06 56.2 262 25.6
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 7.6e-06 56.2 262 25.6
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.0e-05 55.8 268 25.7
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 1.0e-05 55.8 273 24.2
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 1.0e-05 55.8 283 24.4


User provided reference genes

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