Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.6e-103 378.3 190 100.0
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.3e-73 280.0 234 68.4
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.3e-72 275.0 235 67.7
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 4.3e-56 221.9 229 58.5
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.5e-36 154.8 224 44.6
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 8.4e-36 154.5 83 90.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.2e-34 150.6 201 46.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.3e-32 142.5 196 45.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 3.1e-30 136.0 223 41.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.8e-28 129.0 149 49.7
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.5e-27 126.3 234 37.6
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 3.2e-27 125.9 156 47.4
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.1e-26 123.2 150 48.7
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.5e-26 122.5 149 47.0
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.5e-26 122.5 149 47.7
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.5e-26 122.5 145 49.0
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 4.6e-26 122.1 149 46.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 6.1e-26 121.7 145 49.7
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 7.9e-26 121.3 192 39.1
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.0e-25 120.9 188 40.4
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 2.3e-25 119.8 145 49.0
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 2.5e-24 116.3 146 45.2
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 4.3e-24 115.5 145 49.0
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 4.3e-24 115.5 149 42.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 4.3e-24 115.5 145 47.6
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 9.7e-24 114.4 225 36.9
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.6e-23 113.6 139 47.5
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.6e-23 113.6 148 43.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.8e-23 112.8 146 41.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.8e-23 112.8 142 49.3
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 8.2e-23 111.3 145 42.8
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 8.2e-23 111.3 146 44.5
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 1.4e-22 110.5 179 37.4
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.0e-21 106.7 146 42.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 4.5e-21 105.5 145 45.5
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 7.7e-21 104.8 149 43.6
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.3e-20 104.0 134 45.5
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.3e-20 104.0 147 44.9
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.3e-20 104.0 185 38.9
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.7e-20 103.6 142 43.7
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 5.0e-20 102.1 146 40.4
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.1e-19 100.9 145 42.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.1e-19 100.9 145 43.4
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.9e-19 100.1 145 42.8
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.5e-19 99.8 190 35.3
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.5e-19 99.8 151 42.4
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 7.2e-19 98.2 145 42.8
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 9.4e-19 97.8 145 42.8
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 2.1e-18 96.7 141 41.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 4.6e-18 95.5 122 45.9
ClCG00G006410 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.0e-17 94.4 42 100.0
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.3e-17 93.2 201 32.3
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.8e-17 91.3 129 41.9
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 5.7e-16 88.6 156 40.4
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 5.7e-16 88.6 137 40.1
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 9.7e-16 87.8 128 43.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 9.7e-16 87.8 143 40.6
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.7e-15 87.0 169 37.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.7e-15 87.0 145 39.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.2e-15 86.7 130 40.8
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.3e-15 85.1 130 40.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.4e-14 83.2 148 37.8
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.1e-14 82.4 134 38.8
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 6.9e-14 81.6 129 41.9
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.5e-13 80.5 74 54.1
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 1.3e-12 77.4 105 42.9
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.1e-11 74.3 111 41.4
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.9e-11 73.6 73 52.1
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 4.2e-11 72.4 151 36.4
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-11 72.0 93 41.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.6e-10 70.5 151 32.5
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 2.1e-10 70.1 93 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.7e-10 69.7 154 32.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.7e-10 69.7 151 35.8
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 7.9e-10 68.2 159 32.1
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.0e-09 67.8 136 32.4
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.3e-09 66.6 91 41.8
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 2.3e-09 66.6 91 45.1
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.0e-09 66.2 91 39.6
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 3.0e-09 66.2 91 39.6
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 5.1e-09 65.5 148 33.8
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-07 60.8 63 49.2
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.3e-07 60.8 63 49.2
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.8e-07 59.7 53 50.9
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 2.8e-07 59.7 43 62.8


User provided reference genes

Program Settings