Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.1e-248 859.8 426 100.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 6.5e-169 597.8 385 78.7
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.7e-165 584.7 411 73.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-138 497.3 280 87.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 8.0e-119 431.4 389 55.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 4.1e-115 419.1 378 56.1
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 7.0e-115 418.3 385 53.8
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 7.5e-109 398.3 389 50.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.2e-108 396.7 393 51.4
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 4.9e-108 395.6 385 51.2
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.6e-106 390.6 390 54.1
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 2.0e-106 390.2 380 51.8
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.5e-106 389.4 384 51.3
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.6e-106 389.0 481 45.3
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 7.8e-106 388.3 386 50.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.6e-105 384.8 387 52.2
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.5e-104 384.0 392 49.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 1.6e-103 380.6 391 52.4
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.0e-103 378.3 386 46.4
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.0e-101 373.6 389 52.4
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 3.4e-101 372.9 384 51.3
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 9.8e-101 371.3 360 51.1
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.3e-100 370.9 360 51.1
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.4e-100 368.6 389 48.6
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 8.3e-100 368.2 385 47.8
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.1e-99 367.9 392 50.3
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.9e-99 367.1 385 48.1
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.1e-99 365.9 385 48.8
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.5e-98 362.8 384 47.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 4.6e-98 362.5 384 47.7
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.3e-97 360.1 397 47.6
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 8.6e-97 358.2 383 49.3
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.9e-96 357.1 391 49.1
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.5e-96 356.7 390 49.0
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.2e-95 354.4 404 45.5
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.1e-95 353.6 431 43.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.8e-94 350.5 386 44.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 3.4e-93 346.3 388 46.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 4.4e-93 345.9 387 46.3
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 4.4e-93 345.9 387 46.3
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 4.4e-93 345.9 387 46.0
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 7.5e-93 345.1 441 43.1
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-92 344.0 395 45.6
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 2.2e-92 343.6 336 49.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.7e-92 342.8 383 46.0
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.9e-92 342.4 392 44.4
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 1.1e-91 341.3 389 44.7
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 1.9e-91 340.5 387 45.5
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.9e-91 340.5 384 45.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.9e-91 340.5 412 44.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 9.2e-91 338.2 389 45.0
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 9.2e-91 338.2 399 45.1
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.7e-90 336.7 384 46.4
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 3.5e-90 336.3 385 46.5
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.0e-89 334.7 386 44.3
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.0e-89 333.2 377 45.1
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 5.6e-88 328.9 398 43.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 5.6e-88 328.9 385 45.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.2e-87 327.8 388 44.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.7e-87 325.9 394 42.6
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.0e-85 320.5 409 44.0
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.4e-85 319.3 400 42.8
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 6.4e-84 315.5 396 44.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.2e-82 311.2 409 43.3
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.9e-80 303.9 387 40.3
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.1e-79 298.5 385 42.6
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 5.3e-78 295.8 500 35.0
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 4.9e-76 289.3 282 50.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.5e-72 277.7 281 49.8
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.5e-72 277.7 265 52.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 8.1e-71 271.9 333 45.9
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.3e-70 269.2 388 39.4
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.3e-70 269.2 386 39.9
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 6.9e-70 268.9 279 47.3
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.0e-69 267.3 287 50.5
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.9e-68 262.7 410 38.5
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 9.3e-67 258.5 239 53.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.6e-66 256.1 280 46.1
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 7.9e-66 255.4 305 46.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.8e-65 254.2 285 44.9
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.5e-64 250.4 399 37.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.6e-63 247.7 310 41.9
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 2.4e-62 243.8 279 47.3
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.4e-59 234.6 391 35.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.9e-57 226.5 293 39.9
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 6.7e-57 225.7 379 35.6
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.9e-56 224.2 265 43.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 5.7e-56 222.6 264 46.2
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.1e-55 220.7 250 44.4
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.8e-55 220.3 256 46.1
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 4.8e-55 219.5 357 35.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.4e-54 218.0 257 43.2
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.5e-50 203.4 247 44.5
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 4.6e-50 203.0 294 39.8
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.6e-50 203.0 242 45.9
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-49 201.8 242 45.5
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.3e-48 196.8 200 46.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 3.1e-46 190.3 248 40.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 4.1e-46 189.9 249 40.2
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-45 188.3 249 39.8
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.5e-45 188.0 248 39.5
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 2.6e-45 187.2 199 48.2
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 5.9e-45 186.0 255 40.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.3e-44 184.9 216 44.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.7e-44 184.5 209 45.5
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.8e-44 183.3 267 39.0
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 6.5e-44 182.6 237 41.8
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.1e-43 181.8 242 43.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 3.9e-41 173.3 211 43.1
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.1e-40 171.8 238 42.9
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.1e-40 171.8 191 44.5
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.3e-40 170.2 198 44.9
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.7e-39 167.9 248 37.9
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 8.2e-39 165.6 239 41.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 7.7e-37 159.1 251 38.2
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.8e-36 156.8 249 37.8
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-35 155.2 214 38.8
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.1e-35 155.2 249 36.9
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.5e-35 152.9 250 38.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 9.4e-35 152.1 250 37.2
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.8e-33 147.9 187 46.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.0e-33 147.1 250 38.0
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 5.1e-33 146.4 249 36.9
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-32 145.2 285 32.6
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.4e-32 143.3 148 48.6
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 5.7e-32 142.9 250 36.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 4.8e-31 139.8 250 36.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-30 138.7 249 36.1
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 4.1e-30 136.7 293 31.4
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 9.1e-30 135.6 249 35.3
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.0e-29 134.4 125 51.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.6e-29 134.0 169 39.6
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 3.5e-29 133.7 251 35.1
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.3e-28 131.7 267 32.2
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.3e-28 131.7 159 40.9
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 2.2e-28 131.0 215 35.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 2.5e-27 127.5 145 48.3
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 8.5e-20 102.4 165 38.2
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.6e-18 98.2 52 76.9
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 5.2e-17 93.2 261 29.5
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.4e-14 85.1 44 75.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.0e-13 81.3 65 55.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 5.9e-13 79.7 103 39.8
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 5.5e-11 73.2 87 43.7
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-10 71.2 177 29.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.7e-10 70.1 124 36.3
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.0e-09 68.9 146 32.2
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.8e-06 58.2 80 40.0
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.1e-06 57.4 76 39.5


User provided reference genes

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