Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G000750 Citrullus lanatus HOM05D007737 ORTHO05D009754 1.9e-56 222.2 110 100.0
CsaV3_6G006540 Cucumis sativus L. HOM05D007737 ORTHO05D009754 6.2e-31 137.5 80 82.5
Sed0019089 Sechium edule HOM05D007737 ORTHO05D009754 1.2e-29 133.3 80 78.8
CSS0024286 Camellia sinensis var. sinensis HOM05D007737 ORTHO05D009754 1.6e-23 112.8 77 70.1
FAN06G2876 Fragaria x ananassa HOM05D007737 ORTHO05D009754 6.2e-23 110.9 88 61.4
LjContig00564g0006359 Lotus japonicus HOM05D007737 ORTHO05D009754 1.5e-21 106.3 69 68.1
Lalb_Chr17g0347681 Lupinus albus HOM05D007737 ORTHO05D009754 2.6e-21 105.5 69 68.1
Dinv43570 Davidia involucrata HOM05D007737 ORTHO05D009754 4.4e-21 104.8 65 72.3
Phvul.008G205200 Phaseolus vulgaris HOM05D007737 ORTHO05D009754 4.4e-21 104.8 68 67.6
MD02G1228500 Malus domestica HOM05D007737 ORTHO05D009754 1.3e-20 103.2 72 68.1
RcHm_v2.0_Chr0c20g0500251 Rosa chinensis HOM05D007737 ORTHO05D009754 1.3e-20 103.2 69 66.7
QL04p025132 Quercus lobata HOM05D007737 ORTHO05D009754 2.2e-20 102.4 85 63.5
CiPaw.13G019700 Carya illinoinensis HOM05D007737 ORTHO05D009754 1.4e-19 99.8 70 65.7
Actinidia05801 Actinidia chinensis HOM05D007737 ORTHO05D009754 3.2e-19 98.6 82 61.0
Actinidia30967 Actinidia chinensis HOM05D007737 ORTHO05D009754 3.2e-19 98.6 74 66.2
ECA236G0282 Erigeron canadensis HOM05D007737 ORTHO05D009754 7.1e-19 97.4 70 64.3
Cc02_g25850 Coffea canephora HOM05D007737 ORTHO05D009754 9.2e-19 97.1 79 64.6
FvH4_7g08430 Fragaria vesca HOM05D007737 ORTHO05D009754 9.2e-19 97.1 68 63.2
Glyma.02G276300 Glycine max HOM05D007737 ORTHO05D009754 1.6e-18 96.3 80 58.8
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 2.1e-18 95.9 105 51.4
FAN03G2224 Fragaria x ananassa HOM05D007737 ORTHO05D009754 3.5e-18 95.1 80 56.2
FAN10G0020 Fragaria x ananassa HOM05D007737 ORTHO05D009754 3.5e-18 95.1 80 56.2
Hma1.2p1_0601F.1_g187210 Hydrangea macrophylla HOM05D007737 ORTHO05D009754 2.3e-17 92.4 63 66.7
Thecc.10G000900 Theobroma cacao HOM05D007737 ORTHO05D009754 6.6e-17 90.9 80 57.5
arahy.Tifrunner.gnm1.ann1.HH45UC Arachis hypogaea HOM05D007737 ORTHO05D009754 8.7e-17 90.5 82 53.7
Lsat_1_v5_gn_7_11721 Lactuca sativa HOM05D007737 ORTHO05D009754 8.7e-17 90.5 89 55.1
Oeu029042.1 Olea europaea HOM05D007737 ORTHO05D009754 1.5e-16 89.7 83 55.4
Manes.12G126400 Manihot esculenta HOM05D007737 ORTHO05D009754 1.9e-16 89.4 97 52.6
MELO3C022466.2 Cucumis melo HOM05D007737 ORTHO05D009754 2.5e-16 89.0 80 63.8
Psat0s2829g0120 Pisum sativum HOM05D007737 ORTHO05D009754 2.5e-16 89.0 54 79.6
Psat0s4349g0040 Pisum sativum HOM05D007737 ORTHO05D009754 2.5e-16 89.0 54 79.6
Sc02g0003320 Simmondsia chinensis HOM05D007737 ORTHO05D009754 2.5e-16 89.0 48 77.1
TAR375G1083 Trochodendron aralioides HOM05D007737 ORTHO05D009754 2.5e-16 89.0 69 59.4
arahy.Tifrunner.gnm1.ann1.BW18VB Arachis hypogaea HOM05D007737 ORTHO05D009754 5.6e-16 87.8 82 53.7
Sopen06g017020 Solanum pennellii HOM05D007737 ORTHO05D009754 7.3e-16 87.4 69 59.4
HanXRQChr06g0168511 Helianthus annuus HOM05D007737 ORTHO05D009754 1.2e-15 86.7 48 79.2
Eucgr.D01138 Eucalyptus grandis HOM05D007737 ORTHO05D009754 1.6e-15 86.3 58 67.2
PGSC0003DMG400015652 Solanum tuberosum HOM05D007737 ORTHO05D009754 2.1e-15 85.9 48 72.9
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 2.8e-15 85.5 82 52.4
Duzib128G0131 Durio zibethinus HOM05D007737 ORTHO05D009754 3.6e-15 85.1 81 59.3
Psat0s4932g0040 Pisum sativum HOM05D007737 ORTHO05D009754 3.6e-15 85.1 54 77.8
Solyc06g051160.4 Solanum lycopersicum HOM05D007737 ORTHO05D009754 3.6e-15 85.1 80 53.8
MSTRG.4970 Avicennia marina HOM05D007737 ORTHO05D009754 1.1e-14 83.6 67 61.2
PGR119G2515 Punica granatum HOM05D007737 ORTHO05D009754 1.4e-14 83.2 81 56.8
CANSAT35G0994 Cannabis sativa HOM05D007737 ORTHO05D009754 1.8e-14 82.8 65 61.5
Migut.N01704 Erythranthe guttata HOM05D007737 ORTHO05D009754 3.1e-14 82.0 46 80.4
Gohir.D04G072800 Gossypium hirsutum HOM05D007737 ORTHO05D009754 4.0e-14 81.6 80 50.0
Gorai.012G081800 Gossypium raimondii HOM05D007737 ORTHO05D009754 5.2e-14 81.3 80 50.0
Gohir.A05G333700 Gossypium hirsutum HOM05D007737 ORTHO05D009754 6.9e-14 80.9 80 50.0
Ciclev10022762m.g Citrus clementina HOM05D007737 ORTHO05D009754 9.0e-14 80.5 53 66.0
GSVIVG01018401001 Vitis vinifera HOM05D007737 ORTHO05D009754 9.0e-14 80.5 61 63.9
TWI23G0770 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 1.2e-13 80.1 51 74.5
Sabra14G0139900 Salix brachista HOM05D007737 ORTHO05D009754 2.6e-13 79.0 46 71.7
Atru.chr5.19 Acer truncatum HOM05D007737 ORTHO05D009754 3.4e-13 78.6 40 80.0
AUR62023349 Chenopodium quinoa HOM05D007737 ORTHO05D009754 4.4e-13 78.2 80 53.8
CAN.G1183.16 Capsicum annuum HOM05D007737 ORTHO05D009754 9.9e-13 77.0 75 49.3
PSO210G3843 Papaver somniferum HOM05D007737 ORTHO05D009754 9.9e-13 77.0 58 63.8
TWI14G0846 Tripterygium wilfordii HOM05D007737 ORTHO05D009754 9.9e-13 77.0 50 74.0
DCAR_029388 Daucus carota HOM05D007737 ORTHO05D009754 1.3e-12 76.6 73 58.9
PSO210G3425 Papaver somniferum HOM05D007737 ORTHO05D009754 1.3e-12 76.6 51 70.6
AUR62013808 Chenopodium quinoa HOM05D007737 ORTHO05D009754 2.2e-12 75.9 67 59.7
Os04g0589200 Oryza sativa ssp. japonica HOM05D007737 ORTHO05D009754 2.2e-12 75.9 74 45.9
Potri.014G179800 Populus trichocarpa HOM05D007737 ORTHO05D009754 4.9e-12 74.7 65 60.0
HPP92_007269 Vanilla planifolia HOM05D007737 ORTHO05D009754 1.4e-11 73.2 61 59.0
Mapoly0099s0043 Marchantia polymorpha HOM05D007737 ORTHO05D009754 1.9e-11 72.8 43 67.4
Nitab4.5_0000507g0110 Nicotiana tabacum HOM05D007737 ORTHO05D009754 2.4e-11 72.4 65 55.4
Nitab4.5_0011440g0030 Nicotiana tabacum HOM05D007737 ORTHO05D009754 3.2e-11 72.0 65 53.8
arahy.Tifrunner.gnm1.ann1.J0MG2W Arachis hypogaea HOM05D007737 ORTHO05D009754 5.4e-11 71.2 82 48.8
COL.COLO4_19346 Corchorus olitorius HOM05D007737 ORTHO05D009754 7.8e-10 67.4 80 45.0
HPP92_007265 Vanilla planifolia HOM05D007737 ORTHO05D009754 6.6e-09 64.3 51 58.8
THA.LOC104806480 Tarenaya hassleriana HOM05D007737 ORTHO05D009754 5.6e-08 61.2 70 44.3
SalBow4G2387 Salvia bowleyana HOM05D007737 ORTHO05D009754 2.1e-07 59.3 102 37.3
SGA_v2.0_scaffold77G25232 Striga asiatica HOM05D007737 ORTHO05D009754 2.1e-07 59.3 34 70.6
Pp3c17_5190 Physcomitrium patens HOM05D007737 ORTHO05D009754 1.8e-06 56.2 43 55.8
Carub.0003s1738 Capsella rubella HOM05D007737 ORTHO05D009754 3.1e-06 55.5 52 48.1
AagrBONN_evm.TU.Sc2ySwM_344.418 Anthoceros agrestis HOM05D007737 ORTHO05D009754 4.0e-06 55.1 35 65.7


User provided reference genes

Program Settings