Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 4.4e-133 478.0 254 100.0
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.5e-106 388.7 254 84.3
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.4e-101 372.1 253 82.6
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.3e-96 355.5 255 77.6
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.8e-95 352.4 254 77.2
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.4e-65 253.8 249 57.0
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 4.0e-65 252.3 254 57.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.5e-64 250.4 256 57.4
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 8.3e-63 244.6 257 57.2
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.4e-62 241.9 256 56.6
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.5e-61 239.2 256 56.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 7.7e-61 238.0 264 54.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.0e-60 237.7 255 56.1
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.3e-60 237.3 258 53.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 5.0e-60 235.3 258 53.1
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 6.6e-60 235.0 253 57.3
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.6e-60 234.6 253 56.9
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.5e-59 233.8 259 55.6
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.5e-59 233.0 246 56.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 4.3e-59 232.3 254 52.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 7.3e-59 231.5 256 52.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.2e-58 230.7 257 53.3
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.6e-58 230.3 253 52.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.7e-58 228.8 274 50.4
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 6.1e-58 228.4 265 53.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 8.0e-58 228.0 254 50.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.0e-57 227.6 251 53.4
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.0e-57 227.6 268 54.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.4e-57 227.3 259 51.7
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 3.0e-57 226.1 265 50.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.0e-57 226.1 254 55.1
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 5.2e-57 225.3 273 53.1
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.6e-56 223.0 254 51.6
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.7e-56 221.9 255 51.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.2e-55 219.9 259 50.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 2.2e-55 219.9 252 51.2
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.9e-55 219.5 262 53.4
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.9e-55 219.5 262 53.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.9e-55 219.5 255 54.5
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.7e-55 219.2 260 51.2
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 4.9e-55 218.8 259 49.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.4e-54 217.2 245 56.3
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.8e-54 216.9 279 52.3
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.8e-54 216.9 254 54.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.8e-54 216.9 258 53.5
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.2e-54 216.1 262 51.9
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.6e-53 213.8 242 50.8
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.0e-53 213.4 198 59.1
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.5e-53 212.6 251 49.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.6e-53 212.2 258 54.7
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.8e-53 211.5 261 52.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-52 211.1 261 51.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.0e-52 211.1 255 49.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-52 210.3 259 49.0
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 3.0e-52 209.5 267 49.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.0e-52 209.5 261 51.7
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-52 208.8 267 49.8
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 6.6e-52 208.4 317 45.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 8.6e-52 208.0 242 52.9
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.5e-51 207.2 239 50.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.5e-51 207.2 243 50.6
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 2.5e-51 206.5 265 52.5
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.5e-51 206.5 208 55.8
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.3e-51 206.1 242 50.4
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 3.3e-51 206.1 259 52.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 5.6e-51 205.3 254 48.4
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 5.6e-51 205.3 254 48.8
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 9.5e-51 204.5 260 44.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 9.5e-51 204.5 260 48.1
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-50 204.1 253 49.8
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-50 204.1 253 49.8
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.2e-50 204.1 243 49.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.6e-50 203.8 257 49.4
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.6e-50 203.8 244 51.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 8.0e-50 201.4 242 50.4
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 8.0e-50 201.4 241 51.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 8.0e-50 201.4 244 51.2
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.4e-49 200.7 255 50.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.8e-49 200.3 233 52.8
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 8.9e-49 198.0 256 46.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.0e-48 196.8 260 47.3
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.0e-48 196.8 245 48.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.0e-48 196.8 257 47.1
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 7.5e-48 194.9 245 47.8
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.3e-47 194.1 249 47.4
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.9e-47 192.2 176 54.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.9e-47 192.2 262 48.9
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 6.4e-47 191.8 255 48.2
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 6.4e-47 191.8 255 48.2
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.4e-46 190.7 251 45.4
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.9e-46 190.3 256 46.5
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 7.0e-46 188.3 252 47.6
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 7.0e-46 188.3 244 49.2
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.0e-45 186.8 255 47.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.0e-45 186.8 217 57.6
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.3e-44 184.1 264 45.1
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.3e-44 184.1 247 49.0
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.3e-44 184.1 246 46.3
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.3e-44 183.3 249 47.8
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.0e-44 183.0 283 44.5
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 4.3e-43 179.1 251 47.8
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 5.6e-43 178.7 171 60.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 9.5e-43 177.9 288 44.1
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 3.6e-42 176.0 249 43.8
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.6e-42 176.0 166 53.6
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 4.7e-42 175.6 253 46.6
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.1e-41 174.5 254 43.7
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.1e-41 174.5 254 46.9
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 4.4e-40 169.1 266 46.6
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.4e-40 169.1 240 45.0
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 5.8e-40 168.7 253 46.2
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 9.8e-40 167.9 248 45.6
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 4.1e-38 162.5 264 43.2
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 7.1e-38 161.8 270 42.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.2e-37 161.0 157 53.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.3e-36 156.8 164 48.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 5.1e-36 155.6 267 43.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 5.1e-36 155.6 247 44.1
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.5e-35 154.1 249 40.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.2e-34 151.0 280 38.6
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-34 151.0 266 42.1
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.2e-34 148.7 371 34.5
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.1e-33 146.4 138 56.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 5.8e-32 142.1 161 47.2
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.3e-31 141.0 370 33.5
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 1.4e-30 137.5 143 55.2
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 3.9e-28 129.4 141 49.6
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 5.1e-28 129.0 198 40.4
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.5e-24 117.5 243 41.2
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-22 109.8 212 34.4
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 5.4e-22 109.0 148 45.9
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.3e-19 99.4 155 44.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.6e-19 98.2 67 67.2
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.6e-18 97.4 237 31.2
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 2.8e-18 96.7 193 33.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.8e-18 96.7 251 35.1
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 6.9e-17 92.0 129 48.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.2e-16 91.3 122 54.1
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 2.6e-16 90.1 187 33.7
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 5.8e-16 89.0 150 38.0
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 8.4e-15 85.1 227 31.3
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.4e-14 83.6 125 48.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 2.1e-13 80.5 185 30.3
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.0e-12 78.2 69 56.5
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 2.4e-06 57.0 92 31.5
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-06 56.6 47 51.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-06 56.6 47 51.1


User provided reference genes

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