Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 7.9e-74 280.4 147 100.0
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 2.4e-46 189.1 147 72.1
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.7e-40 167.9 140 65.7
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 7.7e-29 131.0 123 69.9
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.2e-28 129.4 150 56.7
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 9.5e-11 70.9 65 61.5
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 2.1e-10 69.7 67 61.2
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.1e-10 69.7 67 61.2
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 2.1e-10 69.7 95 50.5
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 2.1e-10 69.7 95 50.5
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 2.8e-10 69.3 138 41.3
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-10 69.3 57 68.4
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 2.8e-10 69.3 65 60.0
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.6e-10 68.9 57 68.4
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 4.7e-10 68.6 122 44.3
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 6.1e-10 68.2 52 69.2
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 6.1e-10 68.2 51 74.5
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.0e-10 67.8 57 68.4
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.0e-09 67.4 62 58.1
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 1.8e-09 66.6 72 56.9
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.8e-09 66.6 65 56.9
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 2.3e-09 66.2 60 65.0
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.3e-09 66.2 63 58.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 2.3e-09 66.2 131 40.5
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.3e-09 66.2 120 35.8
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.3e-09 66.2 67 61.2
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 3.1e-09 65.9 56 62.5
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 5.2e-09 65.1 52 65.4
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 5.2e-09 65.1 64 59.4
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 6.8e-09 64.7 57 63.2
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 6.8e-09 64.7 85 43.5
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.9e-09 64.3 64 60.9
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 1.2e-08 63.9 126 37.3
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 1.2e-08 63.9 59 59.3
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.5e-08 63.5 125 40.0
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 2.6e-08 62.8 73 53.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 4.4e-08 62.0 85 48.2
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 4.4e-08 62.0 54 59.3
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.8e-08 61.6 57 63.2
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 7.5e-08 61.2 65 53.8
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.5e-08 61.2 54 64.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 7.5e-08 61.2 54 64.8
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 7.5e-08 61.2 121 40.5
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 7.5e-08 61.2 82 47.6
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 9.8e-08 60.8 55 63.6
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 9.8e-08 60.8 65 56.9
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.3e-07 60.5 52 63.5
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.3e-07 60.5 94 45.7
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.7e-07 60.1 127 38.6
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.7e-07 60.1 55 63.6
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 2.2e-07 59.7 142 34.5
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.2e-07 59.7 72 50.0
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 2.9e-07 59.3 54 63.0
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.7e-07 58.9 50 66.0
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.7e-07 58.9 55 60.0
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 4.9e-07 58.5 101 38.6
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.9e-07 58.5 127 40.2
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 6.4e-07 58.2 46 69.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 6.4e-07 58.2 46 69.6
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 6.4e-07 58.2 57 61.4
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 6.4e-07 58.2 46 67.4
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 8.3e-07 57.8 63 57.1
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 8.3e-07 57.8 63 57.1
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 8.3e-07 57.8 126 39.7
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 8.3e-07 57.8 51 58.8
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 1.1e-06 57.4 126 40.5
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 1.4e-06 57.0 61 55.7
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 1.9e-06 56.6 51 60.8
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.9e-06 56.6 128 35.9
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.9e-06 56.6 133 31.6
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.4e-06 56.2 148 31.8
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.4e-06 56.2 45 64.4
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 2.4e-06 56.2 129 35.7
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 2.4e-06 56.2 35 80.0
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 4.1e-06 55.5 49 57.1
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-06 55.5 46 65.2
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.4e-06 55.1 51 54.9
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 5.4e-06 55.1 55 54.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 5.4e-06 55.1 49 57.1
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.4e-06 55.1 69 50.7
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 9.2e-06 54.3 99 45.5
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 9.2e-06 54.3 46 60.9
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 9.2e-06 54.3 63 55.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 9.2e-06 54.3 61 55.7
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 9.2e-06 54.3 51 56.9


User provided reference genes

Program Settings