Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.0e-154 548.1 291 100.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 3.2e-111 405.6 207 99.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.4e-109 400.2 207 98.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.7e-107 393.3 207 96.1
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 5.0e-104 381.7 207 91.8
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 6.5e-104 381.3 207 91.8
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 1.9e-103 379.8 207 91.8
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 3.2e-103 379.0 207 90.8
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 3.2e-103 379.0 207 91.8
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 7.2e-103 377.9 206 91.7
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 7.2e-103 377.9 207 90.3
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 7.2e-103 377.9 207 90.8
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.2e-103 377.9 207 90.8
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 7.2e-103 377.9 206 91.7
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 7.2e-103 377.9 207 90.8
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 9.4e-103 377.5 207 89.9
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 1.2e-102 377.1 206 90.8
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 1.2e-102 377.1 206 90.8
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.6e-102 376.7 207 89.4
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.6e-102 376.7 207 90.8
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.6e-102 376.7 207 90.8
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.6e-102 376.7 207 90.3
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.6e-102 376.7 207 89.9
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 2.1e-102 376.3 207 90.8
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 2.7e-102 375.9 207 89.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 3.6e-102 375.6 206 91.7
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 4.7e-102 375.2 207 90.3
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 4.7e-102 375.2 207 89.4
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 4.7e-102 375.2 207 89.9
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 6.1e-102 374.8 206 90.8
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 6.1e-102 374.8 207 89.4
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 6.1e-102 374.8 207 89.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 6.1e-102 374.8 207 90.3
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-101 374.0 207 89.9
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.4e-101 373.6 207 88.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.4e-101 373.6 207 89.4
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.8e-101 373.2 207 89.9
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 2.3e-101 372.9 206 90.8
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.9e-101 372.1 207 88.4
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 3.9e-101 372.1 206 89.3
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 3.9e-101 372.1 207 89.9
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 5.1e-101 371.7 206 90.3
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 6.7e-101 371.3 207 89.4
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 6.7e-101 371.3 207 88.9
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 6.7e-101 371.3 207 88.9
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 6.7e-101 371.3 207 88.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 8.8e-101 370.9 206 88.8
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 8.8e-101 370.9 207 89.4
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 8.8e-101 370.9 212 88.2
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 1.5e-100 370.2 206 89.3
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.5e-100 370.2 207 88.4
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 1.5e-100 370.2 206 88.3
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 2.0e-100 369.8 207 88.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 2.0e-100 369.8 207 89.4
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 2.0e-100 369.8 207 89.4
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 4.4e-100 368.6 207 87.9
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 4.4e-100 368.6 207 87.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 5.7e-100 368.2 210 88.6
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 9.7e-100 367.5 207 87.9
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 9.7e-100 367.5 206 89.3
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-99 367.1 207 87.9
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 1.7e-99 366.7 207 88.9
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.2e-99 366.3 207 89.4
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 2.2e-99 366.3 207 87.9
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 2.2e-99 366.3 207 88.4
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 2.2e-99 366.3 207 88.4
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 2.8e-99 365.9 207 88.4
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 6.3e-99 364.8 207 87.9
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 6.3e-99 364.8 207 87.4
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.2e-99 364.4 207 87.4
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.1e-98 364.0 205 88.3
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.1e-98 364.0 207 87.4
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.4e-98 363.6 207 87.0
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 1.8e-98 363.2 205 88.3
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 4.1e-98 362.1 208 87.5
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 4.1e-98 362.1 208 87.5
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 4.1e-98 362.1 208 87.5
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 5.3e-98 361.7 208 87.5
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 5.3e-98 361.7 206 86.9
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 7.0e-98 361.3 207 86.5
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 9.1e-98 360.9 207 88.4
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 1.5e-97 360.1 207 87.0
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.5e-97 360.1 196 92.3
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 1.5e-97 360.1 217 83.4
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.0e-97 359.8 208 87.0
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.0e-97 359.8 208 87.0
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 2.6e-97 359.4 208 87.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 1.3e-96 357.1 208 86.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 2.9e-96 355.9 207 86.5
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 6.5e-96 354.8 208 85.6
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 1.1e-95 354.0 207 84.5
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.4e-95 353.6 208 85.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.9e-95 353.2 207 84.1
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.6e-94 350.1 207 86.0
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-93 346.7 207 81.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 1.8e-93 346.7 207 80.7
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.2e-93 345.1 206 84.5
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 5.2e-93 345.1 206 84.5
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 6.7e-93 344.7 207 84.1
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 8.8e-93 344.4 206 84.5
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.2e-91 339.7 208 83.2
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 8.2e-91 337.8 206 82.5
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.0e-88 330.9 208 83.2
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.0e-88 330.9 207 82.6
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 6.5e-88 328.2 177 89.8
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 3.2e-87 325.9 178 89.9
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 1.2e-86 323.9 178 88.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 2.3e-85 319.7 178 88.8
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 3.0e-85 319.3 207 73.9
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 5.2e-85 318.5 203 82.3
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 7.5e-84 314.7 167 92.8
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 7.5e-84 314.7 190 82.6
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 9.7e-84 314.3 177 86.4
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 1.8e-82 310.1 178 84.3
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 9.1e-82 307.8 207 78.7
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 7.5e-76 288.1 205 72.2
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.7e-75 285.8 207 73.4
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 6.3e-75 285.0 154 92.2
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.4e-74 283.1 155 89.7
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 9.8e-68 261.2 232 62.5
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 4.9e-67 258.8 202 62.4
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 1.1e-66 257.7 200 62.5
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.4e-66 257.3 200 62.0
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.5e-65 252.7 206 66.5
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 5.9e-65 251.9 198 63.1
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 3.4e-60 236.1 161 76.4
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 6.4e-59 231.9 197 56.9
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 2.3e-56 223.4 133 87.2
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.3e-55 218.4 119 89.1
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 1.2e-54 217.6 210 52.4
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 4.4e-52 209.1 204 54.9
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 1.2e-49 201.1 167 64.7
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 2.1e-49 200.3 203 47.8
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 3.5e-49 199.5 150 70.7
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 1.0e-48 198.0 208 55.3
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 8.9e-45 184.9 196 44.4
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.4e-44 183.0 236 42.8
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.3e-40 170.2 160 61.9
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-39 167.2 97 83.5
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 7.3e-39 165.2 207 49.3
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 2.9e-35 153.3 206 47.6
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 2.3e-32 143.7 187 39.0
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 2.1e-30 137.1 99 71.7
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.8e-30 136.7 74 90.5
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 2.4e-29 133.7 95 75.8
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 1.7e-27 127.5 83 74.7
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 3.5e-25 119.8 92 68.5
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 3.9e-24 116.3 135 51.1
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 5.6e-23 112.5 73 79.5
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 2.8e-22 110.2 59 83.1
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 6.2e-22 109.0 60 88.3
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 5.8e-20 102.4 82 64.6
MELO3C011896.2 Cucumis melo HOM05D008421 ORTHO05D010563 4.2e-18 96.3 62 95.2
Sed0004212 Sechium edule HOM05D008421 ORTHO05D010563 1.2e-12 78.2 63 87.3
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 4.9e-11 72.8 61 59.0
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 7.1e-10 68.9 62 64.5
Glyma.11G247200 Glycine max HOM05D008421 ORTHO05D010563 2.1e-09 67.4 58 55.2
VMungo1383G0937 Vigna mungo HOM05D008421 ORTHO05D010563 2.7e-09 67.0 60 53.3
Gohir.D12G151600 Gossypium hirsutum HOM05D008421 ORTHO05D010563 3.5e-09 66.6 58 63.8
Gorai.008G163100 Gossypium raimondii HOM05D008421 ORTHO05D010563 4.6e-09 66.2 58 67.2
THA.LOC104825525 Tarenaya hassleriana HOM05D008421 ORTHO05D010563 7.9e-09 65.5 60 85.0
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.8e-08 64.3 38 78.9
Gohir.A12G147000 Gossypium hirsutum HOM05D008421 ORTHO05D010563 3.9e-08 63.2 58 72.4
BcaC01g01643 Brassica carinata HOM05D008421 ORTHO05D010563 8.7e-08 62.0 62 53.2
Lj6g0026102 Lotus japonicus HOM05D008421 ORTHO05D010563 1.1e-07 61.6 60 53.3
Phvul.001G258600 Phaseolus vulgaris HOM05D008421 ORTHO05D010563 1.1e-07 61.6 56 50.0
BcaC08g46175 Brassica carinata HOM05D008421 ORTHO05D010563 1.5e-07 61.2 61 50.8
A07p34180 Brassica napus HOM05D008421 ORTHO05D010563 1.5e-07 61.2 61 50.8
C06p42590 Brassica napus HOM05D008421 ORTHO05D010563 1.5e-07 61.2 61 50.8
BolC6t39180H Brassica oleracea HOM05D008421 ORTHO05D010563 1.5e-07 61.2 61 50.8
BraA07t31047Z Brassica rapa HOM05D008421 ORTHO05D010563 1.5e-07 61.2 61 50.8
Duzib251G0144 Durio zibethinus HOM05D008421 ORTHO05D010563 1.5e-07 61.2 58 65.5
Cpa.g.sc233.16 Carica papaya HOM05D008421 ORTHO05D010563 1.9e-07 60.8 59 57.6
Prupe.1G235000 Prunus persica HOM05D008421 ORTHO05D010563 1.9e-07 60.8 59 67.8
Sp1g23390 Schrenkiella parvula HOM05D008421 ORTHO05D010563 3.3e-07 60.1 60 75.0
Aa31LG4G12080 Aethionema arabicum HOM05D008421 ORTHO05D010563 4.3e-07 59.7 63 71.4
BcaB03g15178 Brassica carinata HOM05D008421 ORTHO05D010563 4.3e-07 59.7 63 65.1
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 7.4e-07 58.9 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 9.6e-07 58.5 137 24.8
AL2G26370 Arabidopsis lyrata HOM05D008421 ORTHO05D010563 9.6e-07 58.5 66 71.2
AT1G67670 Arabidopsis thaliana HOM05D008421 ORTHO05D010563 9.6e-07 58.5 66 71.2
Cfa009304 Carpinus fangiana HOM05D008421 ORTHO05D010563 9.6e-07 58.5 59 71.2
Haze_12336 Corylus avellana HOM05D002802 ORTHO05D003166 9.6e-07 58.5 67 50.7
Glyma.18G010100 Glycine max HOM05D008421 ORTHO05D010563 1.3e-06 58.2 58 51.7
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 1.6e-06 57.8 39 64.1
Carub.0002s1405 Capsella rubella HOM05D008421 ORTHO05D010563 3.7e-06 56.6 67 65.7
CiPaw.05G173400 Carya illinoinensis HOM05D008421 ORTHO05D010563 8.2e-06 55.5 57 64.9
Medtr3g085970 Medicago truncatula HOM05D008421 ORTHO05D010563 8.2e-06 55.5 58 53.4


User provided reference genes

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