Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G026110 Citrullus lanatus HOM05D006855 ORTHO05D008695 3.4e-294 1014.2 501 100.0
CsaV3_5G030740 Cucumis sativus L. HOM05D006855 ORTHO05D008695 2.4e-231 805.4 500 81.0
MELO3C011916.2 Cucumis melo HOM05D006855 ORTHO05D008695 4.0e-226 788.1 495 81.2
Sed0018660 Sechium edule HOM05D006855 ORTHO05D008695 4.4e-209 731.5 504 76.8
TAR629G1507 Trochodendron aralioides HOM05D006855 ORTHO05D008695 4.1e-146 522.3 453 59.2
TWI75G0344 Tripterygium wilfordii HOM05D006855 ORTHO05D008695 1.5e-145 520.4 442 59.7
RcHm_v2.0_Chr4g0432431 Rosa chinensis HOM05D006855 ORTHO05D008695 4.5e-145 518.8 448 58.9
CiPaw.05G176800 Carya illinoinensis HOM05D006855 ORTHO05D008695 1.7e-144 516.9 450 59.3
Atru.chr11.2187 Acer truncatum HOM05D006855 ORTHO05D008695 8.5e-144 514.6 452 58.6
FAN12G0810 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.1e-143 514.2 442 58.6
MD13G1105700 Malus domestica HOM05D006855 ORTHO05D008695 2.5e-143 513.1 416 61.5
CSS0002421 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 5.5e-143 511.9 449 58.1
Dinv14753 Davidia involucrata HOM05D006855 ORTHO05D008695 2.1e-142 510.0 452 57.3
FAN17G2133 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.6e-142 508.8 455 57.6
Ciclev10031545m.g Citrus clementina HOM05D006855 ORTHO05D008695 1.4e-141 507.3 453 57.4
Nn3g16630 Nelumbo nucifera HOM05D006855 ORTHO05D008695 1.4e-141 507.3 458 57.9
Medtr3g086360 Medicago truncatula HOM05D006855 ORTHO05D008695 1.8e-141 506.9 415 61.4
GSVIVG01000584001 Vitis vinifera HOM05D006855 ORTHO05D008695 6.7e-141 505.0 451 59.4
Duzib248G0606 Durio zibethinus HOM05D006855 ORTHO05D008695 8.8e-141 504.6 450 57.1
Potri.010G051200 Populus trichocarpa HOM05D006855 ORTHO05D008695 1.1e-140 504.2 448 59.2
FAN22G2334 Fragaria x ananassa HOM05D006855 ORTHO05D008695 3.3e-140 502.7 452 57.1
Actinidia15119 Actinidia chinensis HOM05D006855 ORTHO05D008695 2.2e-139 500.0 452 56.9
CANSAT01G1415 Cannabis sativa HOM05D006855 ORTHO05D008695 2.2e-139 500.0 418 58.9
FAN07G2733 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.8e-139 498.8 449 56.8
TPR.G5676 Trifolium pratense HOM05D006855 ORTHO05D008695 1.1e-138 497.7 432 59.3
Psat5g092640 Pisum sativum HOM05D006855 ORTHO05D008695 4.1e-138 495.7 415 62.7
Glyma.11G244400 Glycine max HOM05D006855 ORTHO05D008695 6.9e-138 495.0 417 60.9
arahy.Tifrunner.gnm1.ann1.FYV5AX Arachis hypogaea HOM05D006855 ORTHO05D008695 1.2e-137 494.2 447 57.7
Prupe.1G240700 Prunus persica HOM05D006855 ORTHO05D008695 1.5e-137 493.8 356 68.0
Thecc.02G266900 Theobroma cacao HOM05D006855 ORTHO05D008695 1.5e-137 493.8 447 57.0
Phvul.001G256400 Phaseolus vulgaris HOM05D006855 ORTHO05D008695 1.0e-136 491.1 418 60.0
Lj6g0028045 Lotus japonicus HOM05D006855 ORTHO05D008695 3.8e-136 489.2 411 60.6
Lalb_Chr11g0075551 Lupinus albus HOM05D006855 ORTHO05D008695 8.5e-136 488.0 416 58.9
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.2e-135 486.1 432 56.5
COL.COLO4_23530 Corchorus olitorius HOM05D006855 ORTHO05D008695 4.2e-135 485.7 417 59.2
PGR083G2447 Punica granatum HOM05D006855 ORTHO05D008695 9.4e-135 484.6 445 56.6
Haze_12292 Corylus avellana HOM05D006855 ORTHO05D008695 1.6e-134 483.8 532 50.6
Manes.12G019600 Manihot esculenta HOM05D006855 ORTHO05D008695 1.6e-134 483.8 406 59.9
Gohir.D12G150600 Gossypium hirsutum HOM05D006855 ORTHO05D008695 1.7e-131 473.8 452 54.6
Aqoxy3G01366 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 2.8e-131 473.0 457 54.3
THA.LOC104825678 Tarenaya hassleriana HOM05D006855 ORTHO05D008695 1.4e-130 470.7 430 55.8
VMungo1383G3215 Vigna mungo HOM05D000933 ORTHO05D000820 5.3e-130 468.8 410 60.2
Aqoxy3G00656 Aquilegia oxysepala HOM05D006855 ORTHO05D008695 9.1e-130 468.0 457 53.6
HanXRQChr12g0371791 Helianthus annuus HOM05D006855 ORTHO05D008695 9.1e-130 468.0 440 54.8
CAN.G379.20 Capsicum annuum HOM05D006855 ORTHO05D008695 1.2e-129 467.6 465 53.8
AUR62024216 Chenopodium quinoa HOM05D006855 ORTHO05D008695 1.2e-129 467.6 444 54.5
Gorai.008G162100 Gossypium raimondii HOM05D006855 ORTHO05D008695 1.2e-129 467.6 446 54.9
Solyc01g008900.4 Solanum lycopersicum HOM05D006855 ORTHO05D008695 1.2e-129 467.6 437 54.9
Sopen01g004390 Solanum pennellii HOM05D006855 ORTHO05D008695 1.5e-129 467.2 406 57.6
PGSC0003DMG400022710 Solanum tuberosum HOM05D006855 ORTHO05D008695 3.5e-129 466.1 437 55.1
Nitab4.5_0015117g0010 Nicotiana tabacum HOM05D006855 ORTHO05D008695 4.5e-129 465.7 418 57.9
Peaxi162Scf00050g00819 Petunia axillaris HOM05D006855 ORTHO05D008695 1.0e-128 464.5 437 55.6
Ah.02g130370 Amaranthus hybridus HOM05D006855 ORTHO05D008695 3.8e-128 462.6 418 56.0
Carub.0005s0400 Capsella rubella HOM05D006855 ORTHO05D008695 3.2e-127 459.5 443 53.7
MSTRG.548 Avicennia marina HOM05D006855 ORTHO05D008695 6.1e-126 455.3 430 55.6
Cc11_g16140 Coffea canephora HOM05D006855 ORTHO05D008695 8.0e-126 454.9 420 57.1
Lsat_1_v5_gn_8_153661 Lactuca sativa HOM05D006855 ORTHO05D008695 1.0e-125 454.5 463 52.5
Thhalv10004274m.g Eutrema salsugineum HOM05D006855 ORTHO05D008695 2.3e-125 453.4 422 55.0
PSO478G2928 Papaver somniferum HOM05D006855 ORTHO05D008695 5.2e-125 452.2 459 53.6
CARHR147120 Cardamine hirsuta HOM05D006855 ORTHO05D008695 6.7e-125 451.8 420 56.2
Migut.K00633 Erythranthe guttata HOM05D006855 ORTHO05D008695 6.7e-125 451.8 428 55.4
PSO210G7557 Papaver somniferum HOM05D006855 ORTHO05D008695 6.7e-125 451.8 457 53.4
Gohir.A12G146000 Gossypium hirsutum HOM05D006855 ORTHO05D008695 3.3e-124 449.5 438 53.9
Aa31LG2G6230 Aethionema arabicum HOM05D006855 ORTHO05D008695 7.4e-124 448.4 417 54.9
C07p35130 Brassica napus HOM05D006855 ORTHO05D008695 8.2e-123 444.9 421 54.9
Sp2g15320 Schrenkiella parvula HOM05D006855 ORTHO05D008695 4.5e-121 439.1 429 53.6
AL5G14830 Arabidopsis lyrata HOM05D006855 ORTHO05D008695 5.9e-121 438.7 448 51.3
BcaC06g33927 Brassica carinata HOM05D006855 ORTHO05D008695 1.3e-120 437.6 421 54.2
BolC7t44041H Brassica oleracea HOM05D006855 ORTHO05D008695 2.2e-120 436.8 421 54.2
CDE02G0600 Ceratophyllum demersum HOM05D006855 ORTHO05D008695 2.2e-120 436.8 412 55.8
Lj3A1062T101 Lonicera japonica HOM05D006855 ORTHO05D008695 2.9e-120 436.4 412 55.1
SalBow2G0666 Salvia bowleyana HOM05D006855 ORTHO05D008695 2.9e-120 436.4 454 50.9
ATR0796G133 Amborella trichopoda HOM05D006855 ORTHO05D008695 6.5e-120 435.3 410 53.4
SGA_v2.0_scaffold100G29585 Striga asiatica HOM05D006855 ORTHO05D008695 3.2e-119 433.0 412 54.4
BcaC06g31090 Brassica carinata HOM05D006855 ORTHO05D008695 2.1e-118 430.3 422 54.3
AUR62005523 Chenopodium quinoa HOM05D006855 ORTHO05D008695 6.1e-118 428.7 354 61.0
BraA06t27139Z Brassica rapa HOM05D006855 ORTHO05D008695 8.0e-118 428.3 413 54.2
A06p42230 Brassica napus HOM05D006855 ORTHO05D008695 1.4e-117 427.6 408 54.4
ECA233G5842 Erigeron canadensis HOM05D000068 ORTHO05D000084 3.1e-114 416.4 392 55.4
EL10As2g23185 Beta vulgaris HOM05D006855 ORTHO05D008695 9.1e-114 414.8 444 50.2
HPP92_023148 Vanilla planifolia HOM05D006855 ORTHO05D008695 4.8e-107 392.5 401 52.4
vmacro16160 Vaccinium macrocarpon HOM05D006855 ORTHO05D008695 8.3e-107 391.7 398 52.5
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 2.3e-104 383.6 447 49.0
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 9.5e-103 378.3 401 51.6
MBI19_g16323_MAGBIO Magnolia biondii HOM05D006855 ORTHO05D008695 1.0e-101 374.8 377 54.4
Ca_25129_v3 Cicer arietinum L. HOM05D006855 ORTHO05D008695 3.4e-100 369.8 283 64.3
Zm00001eb155910 Zea mays HOM05D006855 ORTHO05D008695 2.0e-97 360.5 410 46.8
AT3G26115 Arabidopsis thaliana HOM05D006855 ORTHO05D008695 1.2e-92 344.7 374 50.3
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 7.5e-92 342.0 463 42.8
QL03p056156 Quercus lobata HOM05D006855 ORTHO05D008695 7.5e-92 342.0 303 58.4
Pp3c22_21870 Physcomitrium patens HOM05D006855 ORTHO05D008695 3.0e-88 330.1 403 44.2
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 8.6e-88 328.6 407 44.7
Sc11g0000830 Simmondsia chinensis HOM05D006855 ORTHO05D008695 2.1e-78 297.4 280 54.6
Hund25410 Selenicereus undatus HOM05D006855 ORTHO05D008695 4.7e-78 296.2 326 49.1
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 8.1e-78 295.4 341 47.2
FvH4_4g25240 Fragaria vesca HOM05D006855 ORTHO05D008695 4.3e-71 273.1 265 53.6
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 4.4e-68 263.1 286 51.4
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.3e-64 250.8 412 37.4
Cpa.g.sc33.79 Carica papaya HOM05D006855 ORTHO05D008695 3.9e-64 250.0 182 64.8
SMO327G0033 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 3.6e-62 243.4 301 44.9
Carub.0005s0511 Capsella rubella HOM05D006855 ORTHO05D008695 4.0e-61 240.0 244 52.9
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 2.0e-60 237.7 406 37.4
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.3e-56 224.2 443 34.8
SEGI_08498 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 3.1e-53 213.8 175 57.7
arahy.Tifrunner.gnm1.ann1.74BAAJ Arachis hypogaea HOM05D006855 ORTHO05D008695 2.2e-51 207.6 218 53.7
FAN14G3171 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.4e-50 204.1 144 66.7
FAN18G3688 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.7e-49 200.7 145 65.5
FAN08G3042 Fragaria x ananassa HOM05D006855 ORTHO05D008695 2.5e-47 194.1 139 64.7
QL03p056162 Quercus lobata HOM05D006855 ORTHO05D008695 6.2e-46 189.5 151 63.6
SMO203G0223 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 7.6e-44 182.6 249 42.2
SMO327G0043 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.5e-39 168.3 288 37.8
FAN15G2953 Fragaria x ananassa HOM05D006855 ORTHO05D008695 1.4e-29 135.2 118 54.2
FAN23G2199 Fragaria x ananassa HOM05D006855 ORTHO05D008695 4.1e-29 133.7 112 55.4
CSS0015338 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.6e-25 121.7 122 50.0
CSS0040008 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.5e-23 115.2 137 43.1
Sabra10G0018700 Salix brachista HOM05D000933 ORTHO05D000820 5.3e-21 106.7 129 42.6
ECA233G3820 Erigeron canadensis HOM05D006855 ORTHO05D008695 3.8e-19 100.5 113 50.4
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 5.1e-16 90.1 358 25.4
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 1.7e-14 85.1 341 24.9
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.8e-14 84.3 340 27.4
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 2.4e-13 81.3 330 25.2
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 5.3e-13 80.1 341 24.9
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 2.0e-12 78.2 340 23.5
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 3.5e-12 77.4 338 23.4
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 3.5e-12 77.4 70 60.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 4.5e-12 77.0 336 22.6
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.5e-12 77.0 336 23.5
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.0e-11 75.9 365 21.6
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.2e-11 74.7 336 24.4
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 5.0e-11 73.6 349 23.2
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 8.5e-11 72.8 344 23.0
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 1.1e-10 72.4 341 22.9
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.5e-10 72.0 344 23.5
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.9e-10 71.6 349 23.8
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 5.5e-10 70.1 358 25.1
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 7.2e-10 69.7 349 24.6
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 8.0e-09 66.2 330 21.2


User provided reference genes

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