Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025370 Citrullus lanatus HOM05D007558 ORTHO05D009245 4.4e-82 308.1 184 100.0
MELO3C011993.2 Cucumis melo HOM05D007558 ORTHO05D009245 2.2e-65 252.7 190 86.8
CsaV3_5G031540 Cucumis sativus L. HOM05D001601 ORTHO05D002628 1.1e-53 213.8 146 87.0
Sed0023819 Sechium edule HOM05D007558 ORTHO05D009245 1.2e-39 167.2 142 63.4
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 6.0e-39 164.9 166 60.2
COL.COLO4_24179 Corchorus olitorius HOM05D007558 ORTHO05D009245 7.4e-21 104.8 98 57.1
Prupe.1G252500 Prunus persica HOM05D007558 ORTHO05D009245 1.3e-20 104.0 114 53.5
Cfa009155 Carpinus fangiana HOM05D007558 ORTHO05D009245 5.9e-18 95.1 148 45.3
Thecc.02G251400 Theobroma cacao HOM05D007558 ORTHO05D009245 7.7e-18 94.7 99 56.6
Dinv15286 Davidia involucrata HOM05D000812 ORTHO05D000672 1.0e-17 94.4 146 44.5
FAN12G2944 Fragaria x ananassa HOM05D007558 ORTHO05D009245 1.3e-17 94.0 117 52.1
FvH4_4g34300 Fragaria vesca HOM05D007558 ORTHO05D009245 2.2e-17 93.2 123 50.4
MD16G1094000 Malus domestica HOM05D007558 ORTHO05D009245 2.9e-17 92.8 113 49.6
QL03p060106 Quercus lobata HOM05D007558 ORTHO05D009245 2.9e-17 92.8 166 41.6
FAN22G1900 Fragaria x ananassa HOM05D007558 ORTHO05D009245 3.8e-17 92.4 122 50.0
CSS0017958 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 6.5e-17 91.7 104 51.0
FAN17G0543 Fragaria x ananassa HOM05D007558 ORTHO05D009245 6.5e-17 91.7 116 50.9
FAN07G0793 Fragaria x ananassa HOM05D007558 ORTHO05D009245 8.5e-17 91.3 117 51.3
RcHm_v2.0_Chr4g0443731 Rosa chinensis HOM05D007558 ORTHO05D009245 1.4e-16 90.5 117 47.9
MD13G1093000 Malus domestica HOM05D007558 ORTHO05D009245 1.9e-16 90.1 113 49.6
Glyma.08G286300 Glycine max HOM05D007558 ORTHO05D009245 2.5e-16 89.7 93 57.0
Actinidia08162 Actinidia chinensis HOM05D007558 ORTHO05D009245 4.2e-16 89.0 103 53.4
CiPaw.05G151900 Carya illinoinensis HOM05D007558 ORTHO05D009245 1.2e-15 87.4 87 57.5
Gohir.A04G135600 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.2e-15 87.4 98 48.0
Gohir.D04G178700 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.2e-15 87.4 98 48.0
Gorai.012G171800 Gossypium raimondii HOM05D007558 ORTHO05D009245 1.2e-15 87.4 98 48.0
Duzib268G0018 Durio zibethinus HOM05D007558 ORTHO05D009245 1.6e-15 87.0 99 53.5
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 2.7e-15 86.3 110 52.7
Lj4g0018280 Lotus japonicus HOM05D007558 ORTHO05D009245 2.7e-15 86.3 97 51.5
Phvul.003G060900 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 2.7e-15 86.3 102 51.0
Nn4g22760 Nelumbo nucifera HOM05D007558 ORTHO05D009245 6.1e-15 85.1 90 53.3
Manes.12G027900 Manihot esculenta HOM05D007558 ORTHO05D009245 7.9e-15 84.7 93 55.9
Duzib248G0521 Durio zibethinus HOM05D007558 ORTHO05D009245 1.4e-14 84.0 100 50.0
Hma1.2p1_0536F.1_g173970 Hydrangea macrophylla HOM05D007558 ORTHO05D009245 2.3e-14 83.2 105 51.4
CiPaw.06G071200 Carya illinoinensis HOM05D007558 ORTHO05D009245 3.0e-14 82.8 99 48.5
Lsat_1_v5_gn_8_155581 Lactuca sativa HOM05D007558 ORTHO05D009245 3.9e-14 82.4 104 50.0
Potri.010G041600 Populus trichocarpa HOM05D007558 ORTHO05D009245 3.9e-14 82.4 158 40.5
ECA233G1669 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.5e-13 80.5 98 45.9
Nn3g16851 Nelumbo nucifera HOM05D007558 ORTHO05D009245 1.5e-13 80.5 145 39.3
Ciclev10032958m.g Citrus clementina HOM05D007558 ORTHO05D009245 2.0e-13 80.1 146 43.8
PGR102G1011 Punica granatum HOM05D007558 ORTHO05D009245 2.0e-13 80.1 96 53.1
TPR.G11688 Trifolium pratense HOM05D007558 ORTHO05D009245 3.3e-13 79.3 160 41.9
TPR.G11726 Trifolium pratense HOM05D007558 ORTHO05D009245 3.3e-13 79.3 150 40.7
Medtr5g034200 Medicago truncatula HOM05D007558 ORTHO05D009245 5.7e-13 78.6 112 46.4
SGA_v2.0_scaffold8G04208 Striga asiatica HOM05D007558 ORTHO05D009245 5.7e-13 78.6 91 50.5
Carub.0002s1715 Capsella rubella HOM05D008527 ORTHO05D010701 7.4e-13 78.2 114 43.9
DCAR_007085 Daucus carota HOM05D007558 ORTHO05D009245 7.4e-13 78.2 99 46.5
Gohir.A12G143200 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.7e-13 77.8 98 48.0
Gohir.D12G147900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 9.7e-13 77.8 98 48.0
Gorai.008G159200 Gossypium raimondii HOM05D007558 ORTHO05D009245 9.7e-13 77.8 98 48.0
TWI18G1040 Tripterygium wilfordii HOM05D007558 ORTHO05D009245 1.3e-12 77.4 101 48.5
Lsat_1_v5_gn_4_5541 Lactuca sativa HOM05D007558 ORTHO05D009245 1.7e-12 77.0 83 48.2
CSS0045389 Camellia sinensis var. sinensis HOM05D007558 ORTHO05D009245 2.2e-12 76.6 104 47.1
DCAR_026537 Daucus carota HOM05D007558 ORTHO05D009245 2.2e-12 76.6 86 54.7
THA.LOC104822151 Tarenaya hassleriana HOM05D008527 ORTHO05D010701 2.2e-12 76.6 109 45.9
Lj2g0015975 Lotus japonicus HOM05D007558 ORTHO05D009245 2.8e-12 76.3 110 50.0
Nitab4.5_0004636g0010 Nicotiana tabacum HOM05D007558 ORTHO05D009245 2.8e-12 76.3 83 50.6
Gohir.A03G139000 Gossypium hirsutum HOM05D007558 ORTHO05D009245 3.7e-12 75.9 93 47.3
CANSAT01G1746 Cannabis sativa HOM05D007558 ORTHO05D009245 6.3e-12 75.1 77 57.1
Lalb_Chr05g0216831 Lupinus albus HOM05D007558 ORTHO05D009245 6.3e-12 75.1 104 51.0
Glyma.02G035400 Glycine max HOM05D007558 ORTHO05D009245 8.2e-12 74.7 101 46.5
Gohir.D02G161900 Gossypium hirsutum HOM05D007558 ORTHO05D009245 1.1e-11 74.3 93 46.2
BolC2t08819H Brassica oleracea HOM05D008527 ORTHO05D010701 1.4e-11 73.9 113 43.4
Lalb_Chr09g0334981 Lupinus albus HOM05D007558 ORTHO05D009245 1.8e-11 73.6 160 38.1
VMungo0251G2708 Vigna mungo HOM05D007558 ORTHO05D009245 1.8e-11 73.6 100 48.0
Aqoxy3G02932 Aquilegia oxysepala HOM05D007558 ORTHO05D009245 3.1e-11 72.8 151 37.1
A02p16540 Brassica napus HOM05D008527 ORTHO05D010701 3.1e-11 72.8 113 43.4
BraA02t06712Z Brassica rapa HOM05D008527 ORTHO05D010701 3.1e-11 72.8 113 43.4
TAR374G1667 Trochodendron aralioides HOM05D007558 ORTHO05D009245 3.1e-11 72.8 118 43.2
unitig_26.g10360 Utricularia gibba HOM05D007558 ORTHO05D009245 4.1e-11 72.4 101 45.5
GSVIVG01013748001 Vitis vinifera HOM05D007558 ORTHO05D009245 5.3e-11 72.0 78 59.0
VMungo1215G0509 Vigna mungo HOM05D007558 ORTHO05D009245 7.0e-11 71.6 106 50.0
Phvul.002G070800 Phaseolus vulgaris HOM05D007558 ORTHO05D009245 9.1e-11 71.2 106 49.1
ECA234G1002 Erigeron canadensis HOM05D007558 ORTHO05D009245 1.6e-10 70.5 85 45.9
Aa31LG4G10480 Aethionema arabicum HOM05D008527 ORTHO05D010701 3.5e-10 69.3 118 41.5
Psat4g124320 Pisum sativum HOM05D007558 ORTHO05D009245 5.9e-10 68.6 104 42.3
Peaxi162Scf00710g00042 Petunia axillaris HOM05D020724 ORTHO05D009245 1.0e-09 67.8 135 33.3
Atru.chr11.2043 Acer truncatum HOM05D007558 ORTHO05D009245 1.3e-09 67.4 105 43.8
Lalb_Chr16g0382221 Lupinus albus HOM05D007558 ORTHO05D009245 1.3e-09 67.4 103 47.6
CAN.G126.6 Capsicum annuum HOM05D007558 ORTHO05D009245 1.7e-09 67.0 80 46.2
Oeu056732.1 Olea europaea HOM05D007558 ORTHO05D009245 1.7e-09 67.0 109 42.2
Eucgr.B03316 Eucalyptus grandis HOM05D007558 ORTHO05D009245 2.9e-09 66.2 102 44.1
MBI16_g27096_MAGBIO Magnolia biondii HOM05D007558 ORTHO05D009245 5.0e-09 65.5 139 36.7
Cpa.g.sc69.52 Carica papaya HOM05D001601 ORTHO05D002628 6.5e-09 65.1 158 43.0
Migut.E00166 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.1e-08 64.3 118 42.4
unitig_22.g6434 Utricularia gibba HOM05D007558 ORTHO05D009245 1.1e-08 64.3 110 41.8
Oeu054057.1 Olea europaea HOM05D007558 ORTHO05D009245 1.5e-08 63.9 119 37.8
Sc11g0001140 Simmondsia chinensis HOM05D007558 ORTHO05D009245 1.5e-08 63.9 109 38.5
Sp5g25540 Schrenkiella parvula HOM05D008527 ORTHO05D010701 2.5e-08 63.2 91 45.1
BcaB07g32343 Brassica carinata HOM05D008527 ORTHO05D010701 3.2e-08 62.8 107 38.3
Manes.13G029400 Manihot esculenta HOM05D007558 ORTHO05D009245 4.2e-08 62.4 66 54.5
SalBow2G1747 Salvia bowleyana HOM05D007558 ORTHO05D009245 4.2e-08 62.4 88 48.9
PGSC0003DMG400027920 Solanum tuberosum HOM05D007558 ORTHO05D009245 7.2e-08 61.6 80 45.0
EL10Ac6g13681 Beta vulgaris HOM05D023191 ORTHO05D009245 9.4e-08 61.2 91 38.5
BcaC03g15190 Brassica carinata HOM05D008527 ORTHO05D010701 9.4e-08 61.2 91 45.1
C02p27710 Brassica napus HOM05D008527 ORTHO05D010701 9.4e-08 61.2 91 45.1
unitig_8.g3152 Utricularia gibba HOM05D007558 ORTHO05D009245 1.6e-07 60.5 88 46.6
MSTRG.2398 Avicennia marina HOM05D007558 ORTHO05D009245 2.7e-07 59.7 109 40.4
BcaC08g46489 Brassica carinata HOM05D008527 ORTHO05D010701 3.6e-07 59.3 87 40.2
C06p44320 Brassica napus HOM05D008527 ORTHO05D010701 3.6e-07 59.3 87 40.2
BolC6t39502H Brassica oleracea HOM05D008527 ORTHO05D010701 3.6e-07 59.3 87 40.2
Nitab4.5_0000034g0280 Nicotiana tabacum HOM05D007558 ORTHO05D009245 4.7e-07 58.9 72 47.2
Glyma.01G030000 Glycine max HOM05D007558 ORTHO05D009245 6.1e-07 58.5 104 42.3
AL2G29840 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 1.0e-06 57.8 112 35.7
Sopen04g014760 Solanum pennellii HOM05D007558 ORTHO05D009245 1.0e-06 57.8 82 43.9
Migut.L01422 Erythranthe guttata HOM05D007558 ORTHO05D009245 1.4e-06 57.4 68 51.5
AL1G37290 Arabidopsis lyrata HOM05D008527 ORTHO05D010701 1.8e-06 57.0 116 37.1
BcaB05g24574 Brassica carinata HOM05D008527 ORTHO05D010701 1.8e-06 57.0 80 45.0
BcaB05g24577 Brassica carinata HOM05D008527 ORTHO05D010701 1.8e-06 57.0 80 45.0
Solyc04g026250.1 Solanum lycopersicum HOM05D007558 ORTHO05D009245 4.0e-06 55.8 82 43.9
AUR62014050 Chenopodium quinoa HOM05D023191 ORTHO05D009245 5.2e-06 55.5 81 39.5
Thhalv10019272m.g Eutrema salsugineum HOM05D008527 ORTHO05D010701 6.7e-06 55.1 87 42.5
Ah.03g132750 Amaranthus hybridus HOM05D023191 ORTHO05D009245 8.8e-06 54.7 64 48.4
MSTRG.591 Avicennia marina HOM05D007558 ORTHO05D009245 8.8e-06 54.7 91 45.1


User provided reference genes

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