Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 1.3e-176 622.9 306 100.0
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 1.3e-155 553.1 304 92.1
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 5.7e-151 537.7 299 91.6
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 5.9e-132 474.6 306 78.8
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 7.3e-106 387.9 309 66.7
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 2.2e-102 376.3 304 66.1
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 4.9e-102 375.2 286 67.8
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 4.6e-100 368.6 243 76.5
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 1.9e-98 363.2 313 64.2
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 1.6e-97 360.1 326 61.0
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 1.1e-96 357.5 298 63.1
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 7.6e-95 351.3 309 59.2
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 7.6e-95 351.3 352 56.8
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 1.7e-94 350.1 272 66.9
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 1.7e-94 350.1 334 58.7
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 2.9e-94 349.4 339 57.2
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 6.4e-94 348.2 300 61.3
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.1e-93 347.4 286 65.0
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.4e-93 347.1 332 57.8
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.9e-93 346.7 311 61.4
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 3.2e-93 345.9 238 71.0
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 9.2e-93 344.4 264 67.4
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 9.2e-93 344.4 279 62.7
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 1.2e-92 344.0 309 58.3
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.6e-92 343.6 308 60.7
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 2.1e-92 343.2 243 70.0
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 2.7e-92 342.8 298 60.4
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 4.6e-92 342.0 272 65.8
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 6.0e-92 341.7 289 62.6
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 6.0e-92 341.7 306 61.1
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 6.0e-92 341.7 279 63.4
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 6.0e-92 341.7 302 61.9
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 1.3e-91 340.5 308 59.1
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.3e-91 340.5 289 62.6
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 6.6e-91 338.2 240 70.0
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 8.7e-91 337.8 296 62.2
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.1e-90 337.4 239 70.3
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.5e-90 337.0 310 61.3
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.9e-90 336.7 245 67.3
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 2.5e-90 336.3 240 70.4
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 4.3e-90 335.5 246 67.9
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 4.3e-90 335.5 246 67.9
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 4.3e-90 335.5 284 63.0
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 1.6e-89 333.6 313 56.5
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.6e-89 333.6 304 59.5
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 2.1e-89 333.2 236 68.6
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 4.7e-89 332.0 317 57.4
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 4.7e-89 332.0 299 59.2
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 6.2e-89 331.6 332 57.5
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 6.2e-89 331.6 242 69.8
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 8.1e-89 331.3 313 56.5
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 2.4e-88 329.7 283 62.9
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 4.0e-88 328.9 269 62.8
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 4.0e-88 328.9 235 68.5
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 4.0e-88 328.9 249 64.7
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 6.9e-88 328.2 325 57.8
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.2e-87 327.4 325 58.2
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 1.2e-87 327.4 313 57.8
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 1.2e-87 327.4 277 62.5
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 2.6e-87 326.2 278 60.8
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.6e-87 326.2 238 67.6
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.4e-87 325.9 289 59.9
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 7.6e-87 324.7 285 60.4
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.3e-86 323.9 239 69.0
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.7e-86 323.6 272 61.8
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 2.2e-86 323.2 301 57.5
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 2.9e-86 322.8 312 59.3
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 3.8e-86 322.4 305 57.4
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 3.2e-85 319.3 300 58.0
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 4.2e-85 318.9 252 65.1
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 5.4e-85 318.5 296 57.8
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 5.4e-85 318.5 237 66.7
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 1.7e-83 313.5 305 54.8
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 3.0e-83 312.8 304 54.3
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 5.1e-83 312.0 299 55.5
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 1.9e-82 310.1 232 65.9
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 2.5e-82 309.7 257 60.3
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 2.5e-82 309.7 268 61.2
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 3.3e-82 309.3 290 58.3
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 3.3e-82 309.3 290 58.3
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.3e-82 309.3 323 53.6
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 4.3e-82 308.9 257 63.8
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 1.6e-81 307.0 263 60.1
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 4.8e-81 305.4 295 58.0
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 6.2e-81 305.1 325 53.5
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 6.2e-81 305.1 306 53.6
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.1e-80 304.3 301 56.5
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.1e-80 302.8 268 60.1
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 9.9e-79 297.7 255 63.9
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.9e-78 296.2 313 53.7
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 4.9e-78 295.4 196 75.0
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 3.2e-77 292.7 328 51.2
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 1.2e-76 290.8 214 65.0
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.5e-74 283.9 253 57.3
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.5e-74 283.1 313 52.4
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 1.1e-72 277.7 291 53.3
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 4.0e-72 275.8 287 51.6
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 1.2e-71 274.2 202 69.3
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 6.4e-70 268.5 334 47.6
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 4.2e-69 265.8 248 55.6
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 2.1e-68 263.5 280 52.1
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.4e-64 250.8 294 52.7
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 2.9e-62 243.0 178 65.7
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 4.9e-62 242.3 226 58.8
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.9e-58 230.3 143 78.3
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 2.2e-57 226.9 181 62.4
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 3.1e-56 223.0 241 50.6
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.0e-54 218.0 228 50.0
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 1.1e-53 214.5 137 78.1
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 9.7e-50 201.4 290 42.1
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.3e-49 201.1 224 54.0
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 1.3e-49 201.1 286 43.0
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 3.7e-49 199.5 217 51.6
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.0e-46 189.1 229 45.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 2.2e-41 173.7 261 41.4
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.1e-40 168.3 216 45.8
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.1e-40 168.3 216 45.8
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 5.0e-38 162.5 223 42.6
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 1.7e-33 147.5 198 40.9
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 9.4e-29 131.7 93 75.3
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 6.1e-28 129.0 86 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 2.8e-25 120.2 181 41.4
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.1e-24 118.2 243 35.4
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 8.6e-14 82.0 59 71.2
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 4.6e-07 59.7 243 21.8
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 4.6e-07 59.7 122 31.1


User provided reference genes

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