Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.8e-139 499.2 249 100.0
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 8.1e-87 324.3 167 97.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 3.5e-74 282.3 149 96.0
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 7.3e-72 274.6 164 82.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 6.2e-71 271.6 166 83.7
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 6.9e-70 268.1 164 82.3
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.4e-69 265.8 164 79.9
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 4.4e-69 265.4 163 82.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.3e-68 263.8 164 80.5
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.3e-68 263.8 166 80.7
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.7e-68 263.5 171 77.8
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 2.2e-68 263.1 161 82.0
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.2e-68 263.1 168 80.4
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 8.4e-68 261.2 171 77.2
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.1e-67 260.8 166 77.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.2e-67 259.2 169 77.5
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.1e-66 256.5 166 75.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 3.5e-66 255.8 169 76.3
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.5e-66 255.8 161 78.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 6.0e-66 255.0 158 81.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 7.8e-66 254.6 164 80.5
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 1.0e-65 254.2 168 75.6
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.0e-65 254.2 158 81.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.7e-65 253.4 166 76.5
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 5.1e-65 251.9 163 78.5
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 6.6e-65 251.5 159 79.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 8.7e-65 251.1 176 73.9
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.5e-64 250.4 163 76.7
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.9e-64 250.0 159 79.9
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 2.5e-64 249.6 161 77.6
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.3e-64 248.1 158 78.5
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 7.3e-64 248.1 166 74.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 2.8e-63 246.1 163 77.9
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.8e-63 246.1 158 77.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 4.8e-63 245.4 172 72.1
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 4.8e-63 245.4 160 76.9
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 6.2e-63 245.0 167 75.4
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 6.2e-63 245.0 161 75.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 8.1e-63 244.6 159 76.1
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.1e-62 244.2 157 76.4
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.1e-62 244.2 191 68.1
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 1.8e-62 243.4 167 73.1
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 2.4e-62 243.0 173 71.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.0e-62 242.3 169 74.0
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 4.0e-62 242.3 169 74.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.3e-62 241.9 169 74.0
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 5.3e-62 241.9 159 76.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 1.2e-61 240.7 163 76.1
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.5e-61 240.4 167 73.1
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.0e-61 240.0 164 73.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.8e-60 235.7 164 70.7
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 4.9e-60 235.3 161 73.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.2e-59 232.6 158 74.1
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.2e-59 232.6 171 70.8
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 4.2e-59 232.3 160 73.1
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.4e-59 231.9 177 70.1
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 9.3e-59 231.1 228 57.0
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.6e-58 230.3 193 64.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.1e-58 229.9 175 68.6
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.0e-58 228.4 162 73.5
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 7.9e-58 228.0 163 71.2
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 1.8e-57 226.9 161 72.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 3.9e-57 225.7 164 66.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 5.1e-57 225.3 194 60.8
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 1.9e-56 223.4 155 72.9
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.6e-56 221.9 162 71.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 7.4e-56 221.5 163 68.1
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 9.6e-56 221.1 159 71.7
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.1e-55 219.9 161 68.9
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 2.1e-55 219.9 161 68.9
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.8e-54 216.9 161 70.8
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 5.3e-54 215.3 171 69.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 9.0e-54 214.5 151 74.2
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-53 213.0 162 69.8
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 7.6e-53 211.5 131 84.7
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.8e-52 209.1 154 70.8
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 8.4e-52 208.0 121 86.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.2e-51 205.7 121 84.3
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.1e-50 203.4 155 66.5
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.3e-48 196.1 116 83.6
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 7.4e-48 194.9 151 68.9
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 2.8e-47 193.0 119 79.0
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 1.8e-46 190.3 162 58.6
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 3.1e-46 189.5 162 58.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.0e-46 189.1 119 78.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.0e-45 186.8 168 57.7
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.4e-45 186.0 176 59.7
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.5e-45 185.7 168 58.3
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 7.6e-45 184.9 171 56.7
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.6e-45 184.9 158 58.9
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-44 184.5 184 53.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.0e-44 184.5 109 83.5
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.3e-44 184.1 162 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.7e-44 183.7 166 54.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.7e-44 183.7 162 58.0
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.2e-44 183.3 128 75.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.8e-44 182.6 162 58.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.8e-44 182.6 162 58.6
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-43 180.6 162 58.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.9e-43 180.3 172 56.4
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.2e-43 179.1 175 55.4
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 5.5e-43 178.7 172 56.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-42 177.6 159 59.1
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 2.7e-42 176.4 172 55.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 2.7e-42 176.4 97 89.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.0e-41 174.5 161 55.3
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.0e-41 174.5 161 55.3
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.0e-41 172.9 178 53.9
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.1e-41 172.2 155 54.8
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.7e-41 171.4 161 54.7
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.2e-39 166.8 127 69.3
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.7e-39 166.0 120 70.8
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.5e-37 160.6 133 63.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.4e-35 151.4 121 62.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.8e-33 147.1 145 55.2
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 4.3e-32 142.5 167 44.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.7e-32 142.1 116 62.9
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 9.7e-32 141.4 145 55.9
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-31 140.6 138 53.6
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 2.8e-31 139.8 136 58.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 4.8e-31 139.0 185 41.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 8.2e-31 138.3 190 40.5
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 2.4e-30 136.7 109 63.3
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 3.1e-30 136.3 165 46.7
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.9e-30 135.2 175 44.0
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 9.1e-30 134.8 165 44.2
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.0e-29 133.7 165 44.2
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.9e-28 129.8 165 44.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.1e-27 127.9 166 42.2
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.7e-26 123.2 165 43.6
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.8e-25 120.6 78 76.9
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.3e-25 120.2 166 41.0
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-23 114.0 161 41.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 4.5e-21 105.9 131 48.9
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 3.8e-20 102.8 157 35.0
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.3e-17 93.6 123 43.9
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.5e-16 90.9 162 37.0
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 8.2e-15 85.1 48 85.4
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 3.1e-14 83.2 43 90.7
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 5.3e-14 82.4 41 95.1
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 7.0e-14 82.0 89 49.4
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.0e-13 80.5 42 92.9
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.0e-13 80.5 41 95.1
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 3.5e-13 79.7 41 92.7
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 4.5e-13 79.3 170 32.9
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.8e-12 76.3 41 87.8
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.5e-11 73.6 67 55.2
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.4e-09 67.8 65 55.4
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 5.7e-08 62.4 44 70.5


User provided reference genes

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