Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.5e-269 932.2 438 100.0
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.0e-177 627.1 377 79.6
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 5.8e-149 531.6 280 89.3
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 6.9e-142 508.1 348 65.8
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.4e-139 500.4 347 63.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.2e-133 480.7 349 61.6
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 6.5e-132 474.9 352 61.6
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.4e-131 473.8 347 62.2
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.4e-131 471.1 350 62.9
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.8e-129 466.8 350 60.3
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.0e-128 463.4 356 62.1
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.6e-128 463.0 350 60.3
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 9.7e-128 461.1 347 61.1
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 9.7e-128 461.1 347 59.1
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 2.2e-127 459.9 347 61.1
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 4.8e-127 458.8 350 58.6
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 5.3e-126 455.3 345 60.9
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 7.0e-126 454.9 358 60.3
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.0e-125 453.4 355 60.0
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 2.2e-124 449.9 349 57.3
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 8.5e-124 448.0 351 58.1
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 3.2e-123 446.0 345 58.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 5.5e-123 445.3 371 55.8
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.2e-122 444.1 350 58.9
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.2e-122 444.1 352 58.8
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.7e-122 443.0 353 57.8
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.7e-122 443.0 349 57.0
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.6e-122 442.6 355 59.2
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 6.1e-122 441.8 353 57.8
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.4e-121 440.7 351 58.4
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.8e-121 440.3 351 57.3
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.8e-121 440.3 409 51.1
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 5.2e-121 438.7 349 57.3
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 8.8e-121 438.0 347 58.5
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 1.1e-120 437.6 344 57.3
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.0e-120 436.8 350 58.0
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.6e-120 436.4 346 57.5
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.6e-120 436.4 378 56.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 5.7e-120 435.3 349 57.0
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 9.7e-120 434.5 347 56.2
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 9.7e-120 434.5 351 57.8
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.3e-119 434.1 349 57.6
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 2.2e-119 433.3 351 57.8
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 3.7e-119 432.6 349 57.9
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.8e-119 432.2 344 57.6
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 8.2e-119 431.4 345 57.4
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 1.8e-118 430.3 365 55.9
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.4e-118 429.9 353 57.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.4e-118 429.9 353 57.8
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.4e-118 429.9 349 56.4
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 7.0e-118 428.3 349 57.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 1.0e-116 424.5 347 58.2
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.3e-116 424.1 349 56.4
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 2.2e-116 423.3 349 56.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 3.8e-116 422.5 349 56.4
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 1.9e-115 420.2 347 56.8
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 7.2e-115 418.3 349 57.6
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.2e-114 417.5 345 55.7
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.2e-114 417.5 349 54.4
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 2.1e-114 416.8 349 54.4
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 3.6e-114 416.0 350 55.7
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 6.1e-114 415.2 349 55.0
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.0e-113 414.5 344 55.8
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.8e-113 413.7 319 58.0
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 8.8e-113 411.4 356 56.7
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.6e-112 409.8 368 52.7
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 1.3e-111 407.5 349 54.7
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.2e-111 406.8 320 60.6
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 3.1e-110 402.9 344 55.8
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.5e-109 399.1 354 53.4
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 7.7e-109 398.3 392 50.5
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 7.7e-109 398.3 358 52.8
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.9e-108 396.4 309 59.5
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 3.2e-107 392.9 344 54.1
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.2e-106 391.0 334 56.0
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.7e-106 389.8 349 53.0
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.7e-106 389.8 351 53.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 3.6e-106 389.4 346 52.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.8e-105 387.1 352 52.8
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.3e-105 386.7 333 54.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 3.0e-105 386.3 440 44.5
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 5.2e-105 385.6 349 51.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 5.9e-93 345.5 349 49.0
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.8e-93 345.1 249 63.5
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 7.8e-93 345.1 293 55.3
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.1e-86 324.7 266 57.5
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.4e-86 324.3 345 44.9
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 9.2e-86 321.6 300 53.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.1e-81 306.6 367 43.6
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 9.8e-80 301.6 255 55.3
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.4e-78 295.8 369 40.9
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 1.7e-76 290.8 349 42.7
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 5.6e-75 285.8 344 41.6
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 4.7e-74 282.7 356 42.4
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 6.2e-74 282.3 256 52.0
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 7.1e-70 268.9 329 41.3
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 2.7e-69 266.9 352 39.5
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 1.5e-64 251.1 216 54.2
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 3.4e-64 250.0 349 37.8
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.6e-61 241.1 277 47.3
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 2.3e-44 184.1 297 35.7
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.9e-38 164.5 112 69.6
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 5.5e-38 162.9 355 29.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 7.1e-38 162.5 360 31.7
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.2e-37 161.8 358 29.6
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 3.0e-36 157.1 361 30.7
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 6.7e-36 156.0 357 31.9
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.9e-35 154.5 359 31.8
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.9e-35 154.5 360 31.4
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.9e-35 154.5 364 31.0
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.5e-35 154.1 360 30.6
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.5e-35 154.1 355 30.1
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 3.3e-35 153.7 361 32.1
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 4.3e-35 153.3 360 32.5
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 5.7e-35 152.9 391 29.4
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 5.7e-35 152.9 360 31.4
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 7.4e-35 152.5 355 27.6
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 7.4e-35 152.5 355 27.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 9.6e-35 152.1 359 30.9
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.3e-34 151.8 360 31.4
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.6e-34 151.4 359 31.2
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.1e-34 151.0 359 28.1
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 2.8e-34 150.6 359 32.0
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 6.3e-34 149.4 357 31.7
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 8.2e-34 149.1 358 28.2
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.4e-33 148.3 361 31.3
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.8e-33 147.9 149 47.7
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 2.4e-33 147.5 359 28.1
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.4e-33 147.5 359 31.5
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 2.4e-33 147.5 361 31.9
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.3e-33 146.4 363 31.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 6.9e-33 146.0 358 29.9
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 9.0e-33 145.6 357 31.1
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.2e-32 145.2 361 29.9
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.5e-32 144.8 361 31.0
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.5e-32 144.8 359 30.9
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.0e-32 144.4 355 29.3
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.6e-32 144.1 361 30.7
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.6e-32 144.1 361 30.7
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 3.4e-32 143.7 361 30.2
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 3.4e-32 143.7 361 30.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 3.4e-32 143.7 361 30.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 3.4e-32 143.7 357 27.5
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.4e-32 143.7 361 30.2
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 4.5e-32 143.3 353 30.9
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 4.5e-32 143.3 358 30.7
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 5.8e-32 142.9 364 31.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 5.8e-32 142.9 357 30.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 7.6e-32 142.5 357 28.6
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 1.0e-31 142.1 335 32.2
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.0e-31 142.1 361 30.5
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.3e-31 141.7 357 31.1
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 2.9e-31 140.6 361 30.5
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 3.8e-31 140.2 364 30.8
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 3.8e-31 140.2 361 30.7
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 6.5e-31 139.4 363 30.3
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.4e-30 138.3 364 31.0
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 1.6e-29 134.8 361 30.2
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.6e-29 134.8 193 41.5
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.6e-29 134.8 357 27.2
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.0e-28 132.1 367 28.1
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.5e-27 128.3 131 48.1
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 5.7e-27 126.3 85 67.1
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 2.8e-26 124.0 358 26.5
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.5e-24 118.2 388 26.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 4.6e-21 106.7 243 30.0
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.9e-20 103.6 131 45.8
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.5e-19 101.7 141 38.3
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.0e-19 101.3 279 30.5
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 2.5e-19 100.9 125 47.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 5.7e-19 99.8 435 24.6
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 3.6e-13 80.5 81 42.0
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.4e-12 78.6 187 31.6
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 2.3e-12 77.8 65 55.4
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 8.8e-12 75.9 62 54.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 2.6e-11 74.3 114 38.6
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 1.1e-09 68.9 71 46.5
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 5.0e-07 60.1 51 52.9
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 8.5e-07 59.3 49 46.9
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.9e-06 58.2 44 54.5
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.5e-06 56.6 44 56.8
Oeu048569.1 Olea europaea HOM05D000240 ORTHO05D002608 5.5e-06 56.6 52 53.8


User provided reference genes

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