Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 5.4e-86 321.2 196 100.0
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 2.0e-80 302.8 198 84.8
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 2.6e-80 302.4 199 84.4
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 4.7e-74 281.6 196 74.0
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 1.9e-62 243.0 205 65.9
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 3.2e-62 242.3 204 64.7
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 5.4e-62 241.5 202 65.8
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 2.1e-61 239.6 195 70.3
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 2.1e-61 239.6 200 66.0
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 2.7e-61 239.2 197 65.5
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 2.7e-61 239.2 204 64.2
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 2.7e-61 239.2 203 67.0
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 6.0e-61 238.0 195 65.1
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 7.8e-61 237.7 125 91.2
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 1.0e-60 237.3 178 69.1
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 1.0e-60 237.3 207 63.8
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.3e-60 236.9 125 91.2
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 1.3e-60 236.9 125 91.2
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 1.3e-60 236.9 202 68.3
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.7e-60 236.5 164 74.4
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 1.7e-60 236.5 125 90.4
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 3.0e-60 235.7 201 64.7
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 3.0e-60 235.7 125 92.0
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 3.9e-60 235.3 207 63.3
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 3.9e-60 235.3 127 92.1
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 5.1e-60 235.0 178 69.7
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 5.1e-60 235.0 155 74.8
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 1.5e-59 233.4 125 89.6
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.9e-59 233.0 158 75.3
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.9e-59 233.0 158 75.3
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 1.9e-59 233.0 171 80.1
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 2.5e-59 232.6 171 69.0
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 2.5e-59 232.6 162 73.5
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 2.5e-59 232.6 125 88.8
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 4.3e-59 231.9 125 89.6
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 4.3e-59 231.9 177 78.5
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 4.3e-59 231.9 125 89.6
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 4.3e-59 231.9 163 74.8
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 4.3e-59 231.9 163 74.8
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 5.6e-59 231.5 158 77.8
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 5.6e-59 231.5 158 79.1
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 7.3e-59 231.1 179 67.6
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 9.5e-59 230.7 125 88.8
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 9.5e-59 230.7 203 71.9
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 1.2e-58 230.3 164 72.0
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 1.6e-58 229.9 125 88.8
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 1.6e-58 229.9 125 88.8
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 2.1e-58 229.6 168 70.2
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 2.1e-58 229.6 203 61.6
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 2.8e-58 229.2 125 88.0
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 2.8e-58 229.2 125 88.0
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 2.8e-58 229.2 125 88.0
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 2.8e-58 229.2 168 70.8
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 3.6e-58 228.8 125 88.0
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 3.6e-58 228.8 125 88.0
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 4.7e-58 228.4 125 87.2
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 4.7e-58 228.4 127 89.0
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 1.1e-57 227.3 168 71.4
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 1.8e-57 226.5 196 62.2
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 3.1e-57 225.7 125 86.4
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 3.1e-57 225.7 166 72.9
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 4.0e-57 225.3 125 87.2
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 8.9e-57 224.2 125 86.4
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 8.9e-57 224.2 199 63.3
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 8.9e-57 224.2 166 68.1
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 1.2e-56 223.8 166 72.3
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 1.2e-56 223.8 166 72.3
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.5e-56 223.4 174 67.8
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 1.5e-56 223.4 125 87.2
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 2.0e-56 223.0 205 60.5
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 2.0e-56 223.0 125 87.2
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 2.6e-56 222.6 125 86.4
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.6e-56 222.6 164 68.9
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.6e-56 222.6 125 84.8
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 2.6e-56 222.6 125 84.8
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 3.4e-56 222.2 130 87.7
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 9.9e-56 220.7 126 85.7
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 1.3e-55 220.3 125 85.6
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 1.7e-55 219.9 202 60.4
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 8.4e-55 217.6 121 87.6
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 1.4e-54 216.9 125 84.8
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 1.9e-54 216.5 202 60.9
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 2.4e-54 216.1 202 60.9
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 3.2e-54 215.7 127 83.5
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 2.1e-53 213.0 128 81.2
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 2.7e-53 212.6 203 65.0
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 3.5e-53 212.2 200 62.0
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 6.0e-53 211.5 168 67.9
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 2.3e-52 209.5 127 82.7
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 3.0e-52 209.1 112 88.4
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 3.3e-51 205.7 181 65.2
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 3.3e-51 205.7 135 76.3
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 3.3e-51 205.7 126 81.0
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 7.3e-51 204.5 120 83.3
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 4.0e-49 198.7 112 83.0
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 5.8e-48 194.9 125 80.0
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 1.9e-46 189.9 130 69.2
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 5.4e-46 188.3 127 75.6
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 9.3e-46 187.6 130 68.5
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 2.7e-45 186.0 127 68.5
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 7.8e-45 184.5 112 77.7
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 3.9e-44 182.2 110 78.2
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 2.5e-43 179.5 110 78.2
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 2.4e-41 172.9 107 73.8
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 9.0e-41 171.0 105 76.2
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.1e-35 154.1 171 51.5
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 1.5e-35 153.7 106 64.2
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 2.5e-35 152.9 125 64.0
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 1.0e-23 114.4 123 43.1
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 1.4e-17 94.0 108 41.7
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 6.9e-17 91.7 111 43.2
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 2.0e-16 90.1 52 80.8
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 1.4e-12 77.4 106 32.1


User provided reference genes

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