Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1815.8 887 100.0
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1596.6 890 88.1
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1586.6 890 87.5
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1555.8 884 85.4
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1303.9 874 72.7
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1295.8 874 72.4
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 872 71.7
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 869 71.8
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 865 71.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1278.8 872 70.1
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1277.3 873 70.6
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 871 71.0
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1267.3 869 71.2
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1266.5 870 70.5
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1265.8 870 70.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1265.8 873 70.3
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1261.5 874 70.6
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 871 70.1
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 870 70.1
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 870 70.6
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1258.4 870 70.0
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1257.3 870 69.9
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1256.5 871 70.0
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 874 70.3
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1254.6 874 69.7
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1252.7 1004 62.8
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1252.7 870 70.0
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1252.3 874 69.9
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1251.5 873 69.3
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 873 69.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1250.3 870 69.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1248.0 875 70.5
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1247.3 873 69.1
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1246.5 871 69.0
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1245.0 874 69.1
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1243.4 873 70.0
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 874 69.6
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1243.0 873 69.6
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1241.5 874 68.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1240.3 871 69.1
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1240.3 872 69.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1239.9 871 69.2
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1239.6 874 69.3
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1239.2 874 69.0
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1239.2 873 68.8
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1237.2 873 69.8
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 873 68.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 866 69.6
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1233.8 872 68.5
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1231.9 871 69.2
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1231.5 873 68.3
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1230.3 871 69.3
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1228.8 872 69.3
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1227.2 871 68.7
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 871 68.8
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1214.1 874 67.0
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1207.2 873 67.2
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1205.3 871 67.2
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1204.5 870 67.7
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1201.8 870 67.6
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1198.0 873 67.0
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1194.9 873 67.4
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1188.3 872 66.9
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1187.9 881 66.2
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1177.2 891 64.6
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1171.8 873 67.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1170.6 870 64.6
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1168.7 869 65.5
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1166.8 874 66.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1165.2 871 66.4
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1156.4 886 64.0
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1150.2 874 65.3
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 875 64.1
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 893 63.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1147.1 813 69.4
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1139.4 876 63.9
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1136.7 872 64.1
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 981 59.8
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1135.9 875 63.5
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 759 71.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1133.2 873 64.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1132.9 871 64.1
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1130.5 872 63.9
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1129.4 871 63.9
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 875 63.7
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1127.1 871 64.1
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1126.7 873 63.2
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1124.4 875 63.0
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1123.2 871 62.9
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1117.8 870 62.8
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1111.3 735 72.9
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1110.5 876 63.0
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 2.4e-311 1072.0 879 60.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.4e-311 1072.0 873 60.6
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.7e-310 1068.5 868 60.0
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 7.3e-300 1033.9 870 58.6
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 8.1e-291 1003.8 712 68.4
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 9.3e-287 990.3 875 57.1
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 7.4e-268 927.5 693 65.9
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.2e-263 911.0 583 73.8
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 7.4e-260 901.0 870 54.3
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 4.5e-241 838.6 925 48.0
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.5e-236 823.5 887 48.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.0e-236 823.2 895 47.6
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 8.6e-208 728.0 874 46.6
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.8e-166 590.1 400 70.5
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 8.2e-166 588.6 504 57.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 1.2e-145 521.5 400 65.0
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 5.5e-138 496.1 493 57.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 7.5e-135 485.7 866 40.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 9.7e-135 485.3 367 63.8
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.7e-129 467.2 354 61.3
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.5e-123 446.0 263 79.5
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 4.7e-97 360.1 778 31.6
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.7e-94 350.5 309 54.4
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 1.7e-91 341.7 922 29.2
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.9e-91 340.5 266 61.3
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-89 334.7 195 77.4
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 8.1e-89 332.8 193 82.9
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 8.1e-89 332.8 1032 28.0
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.8e-88 331.6 337 55.5
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 1.1e-85 322.4 192 79.7
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.0e-83 315.8 269 59.5
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 3.4e-71 274.2 278 54.7
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.5e-66 258.8 330 44.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 1.9e-50 205.3 192 52.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 1.3e-41 176.0 207 45.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 1.3e-41 176.0 207 45.9
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.0e-35 156.4 192 45.3
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 4.4e-34 151.0 101 68.3
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 1.7e-30 139.0 164 48.2
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-28 132.9 77 79.2
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 3.6e-28 131.3 138 50.0
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 4.4e-26 124.4 97 61.9
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.8e-24 119.0 218 36.7
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.4e-24 118.6 70 77.1
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.6e-23 115.9 69 76.8
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.5e-21 109.4 64 78.1
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-20 105.9 64 71.9
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.6e-20 104.8 65 66.2
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 6.7e-19 100.5 108 51.9
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.7e-17 95.9 53 73.6
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.1e-16 93.2 120 42.5
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 1.4e-16 92.8 73 63.0
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 9.1e-16 90.1 107 47.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 7.7e-15 87.0 59 64.4
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 1.7e-14 85.9 100 47.0
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.8e-09 68.6 325 23.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.8e-09 68.6 325 23.7
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 3.1e-08 65.1 103 35.9
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 4.5e-07 61.2 99 44.4
ClCG06G017570 Citrullus lanatus HOM05D000464 ORTHO05D006292 5.9e-07 60.8 324 22.8
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 7.7e-07 60.5 313 20.8
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 6.5e-06 57.4 150 26.7
CiPaw.05G179300 Carya illinoinensis HOM05D002332 ORTHO05D002509 8.5e-06 57.0 220 25.5


User provided reference genes

Program Settings