Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G022150 Citrullus lanatus HOM05D007286 ORTHO05D008955 4.2e-293 1010.7 557 100.0
MELO3C012308.2 Cucumis melo HOM05D007286 ORTHO05D008955 3.0e-235 818.5 567 81.1
CsaV3_5G034980 Cucumis sativus L. HOM05D007286 ORTHO05D008955 4.7e-228 794.7 566 79.9
Sed0010854 Sechium edule HOM05D007286 ORTHO05D008955 1.2e-191 673.7 568 71.3
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 4.4e-93 346.3 615 44.7
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 5.6e-88 329.3 613 41.8
CiPaw.13G047300 Carya illinoinensis HOM05D007286 ORTHO05D008955 8.1e-87 325.5 586 43.9
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 1.4e-86 324.7 616 44.2
MD02G1265200 Malus domestica HOM05D007286 ORTHO05D008955 8.9e-86 322.0 627 42.4
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.4e-83 313.9 613 40.9
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.2e-83 313.5 585 42.6
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 3.2e-83 313.5 585 42.6
QL04p050581 Quercus lobata HOM05D007286 ORTHO05D008955 5.4e-83 312.8 624 41.3
RcHm_v2.0_Chr1g0331161 Rosa chinensis HOM05D007286 ORTHO05D008955 5.4e-83 312.8 618 42.6
Prupe.2G060300 Prunus persica HOM05D007286 ORTHO05D008955 1.0e-81 308.5 619 42.3
FAN03G1022 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.9e-80 304.3 616 41.9
FAN06G0358 Fragaria x ananassa HOM05D007286 ORTHO05D008955 2.5e-80 303.9 614 42.0
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 3.3e-80 303.5 598 42.1
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 9.6e-80 302.0 614 41.9
FAN10G3167 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.8e-78 297.7 615 41.5
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 2.4e-78 297.4 605 41.5
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 3.4e-77 293.5 587 42.1
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 1.4e-75 288.1 612 40.5
Potri.010G247100 Populus trichocarpa HOM05D007286 ORTHO05D008955 3.2e-75 287.0 621 40.4
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 5.4e-75 286.2 582 41.6
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 2.1e-74 284.3 582 41.6
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 5.1e-73 279.6 619 39.7
Sabra10G0192500 Salix brachista HOM05D007286 ORTHO05D008955 4.3e-72 276.6 623 38.7
Lalb_Chr19g0132561 Lupinus albus HOM05D007286 ORTHO05D008955 9.6e-72 275.4 598 40.5
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 1.8e-70 271.2 623 39.8
PGR142G0126 Punica granatum HOM05D007286 ORTHO05D008955 5.3e-70 269.6 626 39.9
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 6.9e-70 269.2 615 39.0
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 9.0e-70 268.9 608 39.5
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 3.4e-69 266.9 540 42.4
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 9.9e-69 265.4 586 40.8
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 1.7e-68 264.6 603 39.5
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 3.8e-68 263.5 588 39.5
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 4.2e-67 260.0 579 40.1
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 5.5e-67 259.6 559 38.8
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 7.1e-67 259.2 583 39.5
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 1.0e-65 255.4 577 42.5
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.8e-65 254.6 608 37.5
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 6.7e-65 252.7 533 41.3
AUR62041274 Chenopodium quinoa HOM05D007286 ORTHO05D008955 9.6e-64 248.8 593 37.6
Eucgr.G02637 Eucalyptus grandis HOM05D007286 ORTHO05D008955 1.3e-63 248.4 577 39.2
ECA246G2791 Erigeron canadensis HOM05D000076 ORTHO05D002730 5.3e-62 243.0 579 38.2
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 2.6e-61 240.7 368 45.9
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 2.6e-61 240.7 608 39.8
Haze_03401 Corylus avellana HOM05D007286 ORTHO05D008955 1.3e-60 238.4 530 40.0
Thecc.10G130100 Theobroma cacao HOM05D007286 ORTHO05D008955 1.1e-59 235.3 611 38.3
AUR62034104 Chenopodium quinoa HOM05D007286 ORTHO05D008955 1.9e-59 234.6 591 37.4
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 9.3e-59 232.3 616 35.7
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 1.8e-57 228.0 585 36.8
arahy.Tifrunner.gnm1.ann1.VD1ICN Arachis hypogaea HOM05D007286 ORTHO05D008955 3.0e-57 227.3 613 38.8
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 3.0e-57 227.3 588 36.6
Hund06829 Selenicereus undatus HOM05D007286 ORTHO05D008955 6.7e-57 226.1 592 37.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 2.5e-56 224.2 582 36.8
Duzib128G1558 Durio zibethinus HOM05D000138 ORTHO05D008955 5.7e-56 223.0 537 38.2
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.6e-55 221.5 583 36.7
Sc09g0004920 Simmondsia chinensis HOM05D007286 ORTHO05D008955 2.8e-55 220.7 588 36.1
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 3.7e-55 220.3 582 36.9
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 5.3e-54 216.5 605 36.2
Nitab4.5_0001611g0060 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.2e-53 215.3 602 35.9
EL10Ac4g08793 Beta vulgaris HOM05D007286 ORTHO05D008955 2.0e-53 214.5 615 35.8
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 3.4e-53 213.8 379 42.0
Gohir.A05G285500 Gossypium hirsutum HOM05D007286 ORTHO05D008955 7.6e-53 212.6 579 36.8
Gorai.009G301600 Gossypium raimondii HOM05D007286 ORTHO05D008955 2.2e-52 211.1 613 36.7
Gohir.D05G286600 Gossypium hirsutum HOM05D007286 ORTHO05D008955 4.2e-51 206.8 613 36.7
PSO339G4644 Papaver somniferum HOM05D007286 ORTHO05D008955 1.1e-48 198.7 594 33.7
VMungo1127G2168 Vigna mungo HOM05D007286 ORTHO05D008955 1.8e-46 191.4 269 46.1
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 3.1e-46 190.7 469 39.0
HPP92_018000 Vanilla planifolia HOM05D007286 ORTHO05D008955 3.1e-46 190.7 583 36.4
vmacro13789 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.2e-45 188.7 398 41.5
vmacro23447 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 1.2e-45 188.7 398 41.5
Nitab4.5_0005056g0090 Nicotiana tabacum HOM05D007286 ORTHO05D008955 1.5e-45 188.3 627 33.0
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.7e-44 184.9 580 33.6
MSTRG.20479 Avicennia marina HOM05D007286 ORTHO05D008955 3.6e-42 177.2 590 33.4
Oeu013048.2 Olea europaea HOM05D007286 ORTHO05D008955 1.8e-41 174.9 626 33.5
SGA_v2.0_scaffold143G35713 Striga asiatica HOM05D007286 ORTHO05D008955 4.8e-39 166.8 565 32.9
Migut.B01162 Erythranthe guttata HOM05D007286 ORTHO05D008955 3.8e-36 157.1 580 32.6
Cpa.g.sc54.34 Carica papaya HOM05D007286 ORTHO05D008955 3.0e-33 147.5 141 62.4
SalBow8G2801 Salvia bowleyana HOM05D007286 ORTHO05D008955 3.0e-33 147.5 448 35.7
DCAR_025313 Daucus carota HOM05D007286 ORTHO05D008955 3.9e-33 147.1 433 34.6
CDE04G1177 Ceratophyllum demersum HOM05D007286 ORTHO05D008955 5.7e-32 143.3 564 31.6
FAN10G0279 Fragaria x ananassa HOM05D000139 ORTHO05D008955 3.1e-30 137.5 363 39.4
Cc07_g21350 Coffea canephora HOM05D007286 ORTHO05D008955 6.5e-28 129.8 261 39.1
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 9.4e-27 125.9 295 39.7
Glyma.15G221400 Glycine max HOM05D007286 ORTHO05D008955 3.6e-26 124.0 356 37.1
FAN03G2081 Fragaria x ananassa HOM05D007286 ORTHO05D008955 5.2e-25 120.2 319 37.6
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 1.2e-24 119.0 504 32.7
FAN01G1792 Fragaria x ananassa HOM05D007286 ORTHO05D008955 1.5e-24 118.6 319 37.6
HPP92_026688 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.5e-24 118.6 400 36.0
Cfa000528 Carpinus fangiana HOM05D007286 ORTHO05D008955 5.3e-22 110.2 303 37.3
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 1.0e-20 105.9 106 58.5
Os11g0129800 Oryza sativa ssp. japonica HOM05D007286 ORTHO05D008955 1.7e-20 105.1 258 33.3
Glyma.15G221551 Glycine max HOM05D007286 ORTHO05D008955 2.5e-19 101.3 173 41.0
VMungo1127G0495 Vigna mungo HOM05D007286 ORTHO05D008955 1.2e-18 99.0 311 35.7
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 1.8e-17 95.1 492 29.5
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 2.3e-17 94.7 621 29.8
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 5.2e-17 93.6 449 29.4
Cc07_g21330 Coffea canephora HOM05D007286 ORTHO05D008955 6.8e-17 93.2 308 34.7
vmacro13790 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.6e-16 91.3 213 34.7
vmacro23446 Vaccinium macrocarpon HOM05D007286 ORTHO05D008955 2.6e-16 91.3 213 34.7
Hma1.2p1_0892F.1_g233190 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.5e-16 89.7 80 58.8
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 3.7e-15 87.4 613 29.2
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 3.7e-15 87.4 463 28.9
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.8e-15 87.0 462 31.8
Aqoxy386s001 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 6.3e-15 86.7 304 36.5
AagrBONN_evm.TU.Sc2ySwM_117.3581 Anthoceros agrestis HOM05D024742 ORTHO05D008955 1.4e-14 85.5 277 31.4
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 1.4e-14 85.5 293 31.7
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 1.8e-14 85.1 316 29.1
unitig_22.g5338 Utricularia gibba HOM05D007286 ORTHO05D008955 3.1e-14 84.3 229 32.3
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 4.1e-14 84.0 510 29.0
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 4.1e-14 84.0 451 28.2
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 4.1e-14 84.0 448 28.3
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 4.1e-14 84.0 633 27.0
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 5.4e-14 83.6 448 28.3
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 7.0e-14 83.2 446 28.3
PSO384G4662 Papaver somniferum HOM05D007286 ORTHO05D008955 2.0e-13 81.6 187 35.3
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.7e-13 81.3 163 32.5
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 3.5e-13 80.9 383 29.0
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 4.5e-13 80.5 463 28.9
Dinv30991 Davidia involucrata HOM05D007286 ORTHO05D008955 4.5e-13 80.5 305 33.1
Dinv31112 Davidia involucrata HOM05D007286 ORTHO05D008955 4.5e-13 80.5 305 33.1
HPP92_026687 Vanilla planifolia HOM05D007286 ORTHO05D008955 1.3e-12 79.0 179 36.3
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.7e-12 78.6 483 27.1
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 1.7e-12 78.6 452 28.1
Zm00001eb093550 Zea mays HOM05D007286 ORTHO05D008955 1.7e-12 78.6 623 26.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 2.3e-12 78.2 456 27.9
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 5.0e-12 77.0 426 28.2
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 6.5e-12 76.6 458 27.7
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 6.5e-12 76.6 458 27.9
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 8.6e-12 76.3 300 31.0
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 1.1e-11 75.9 618 26.1
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.1e-11 75.9 454 27.8
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 1.5e-11 75.5 438 28.5
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 4.2e-11 73.9 479 28.6
Mapoly0040s0042 Marchantia polymorpha HOM05D024742 ORTHO05D030099 5.5e-11 73.6 509 27.5
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 7.2e-11 73.2 452 29.0
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 9.5e-11 72.8 433 28.6
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.2e-10 72.4 456 27.9
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.1e-10 71.6 448 28.6
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.8e-10 71.2 480 29.0
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 3.6e-10 70.9 473 27.3
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 3.6e-10 70.9 178 30.9
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 2.3e-09 68.2 438 27.9
Aqoxy386s002 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 8.8e-09 66.2 195 30.3
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 1.2e-08 65.9 462 26.8
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 2.0e-08 65.1 444 29.3
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.6e-08 64.7 126 42.1
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 2.6e-08 64.7 600 25.0
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 9.8e-08 62.8 486 26.1
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 9.8e-08 62.8 601 26.1
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 1.3e-07 62.4 474 27.2
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 1.3e-07 62.4 448 25.2
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.7e-07 62.0 604 26.2
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 2.8e-07 61.2 618 26.1
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 2.8e-07 61.2 444 28.4
SEGI_14285 Sequoiadendron giganteum HOM05D007286 ORTHO05D008955 6.3e-07 60.1 127 30.7
Cpa.g.sc54.32 Carica papaya HOM05D007286 ORTHO05D008955 8.3e-07 59.7 98 42.9
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 8.3e-07 59.7 451 27.9
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.1e-06 59.3 453 27.6
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 1.8e-06 58.5 181 30.9
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 2.4e-06 58.2 545 24.0
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 3.1e-06 57.8 260 29.6
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 4.1e-06 57.4 501 25.0
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 5.4e-06 57.0 564 25.5
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 5.4e-06 57.0 293 27.6
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 5.4e-06 57.0 621 26.7


User provided reference genes

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