Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G022140 Citrullus lanatus HOM05D006789 ORTHO05D008460 1.5e-105 386.3 210 100.0
CsaV3_5G034990 Cucumis sativus L. HOM05D006789 ORTHO05D008460 1.5e-97 359.8 210 91.0
MELO3C012309.2 Cucumis melo HOM05D006789 ORTHO05D008460 2.1e-96 355.9 210 90.0
Sed0016797 Sechium edule HOM05D006789 ORTHO05D008460 1.7e-90 336.3 210 87.1
Sed0010043 Sechium edule HOM05D006789 ORTHO05D008460 1.5e-78 296.6 210 80.0
TWI38G1707 Tripterygium wilfordii HOM05D006789 ORTHO05D008460 2.7e-75 285.8 212 72.2
Ciclev10029282m.g Citrus clementina HOM05D006789 ORTHO05D008460 2.3e-74 282.7 207 71.0
Atru.chr3.2036 Acer truncatum HOM05D006789 ORTHO05D008460 1.1e-73 280.4 207 70.0
Potri.008G012100 Populus trichocarpa HOM05D006789 ORTHO05D008460 4.3e-73 278.5 207 73.4
Hma1.2p1_0892F.1_g233210 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 9.5e-73 277.3 207 71.5
Thecc.10G129500 Theobroma cacao HOM05D006789 ORTHO05D008460 9.5e-73 277.3 216 71.3
Dinv24597 Davidia involucrata HOM05D006789 ORTHO05D008460 1.6e-72 276.6 207 71.5
Gorai.N006500 Gossypium raimondii HOM05D006789 ORTHO05D008460 2.1e-72 276.2 210 68.6
arahy.Tifrunner.gnm1.ann1.KMQ9TB Arachis hypogaea HOM05D006789 ORTHO05D008460 3.6e-72 275.4 205 69.8
Gohir.A06G170900 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.6e-72 275.4 210 68.6
arahy.Tifrunner.gnm1.ann1.G6AZCI Arachis hypogaea HOM05D006789 ORTHO05D008460 4.7e-72 275.0 205 69.8
CiPaw.14G037500 Carya illinoinensis HOM05D006789 ORTHO05D008460 4.7e-72 275.0 207 71.0
Duzib106G0468 Durio zibethinus HOM05D006789 ORTHO05D008460 4.7e-72 275.0 209 69.4
Gohir.D06G178700 Gossypium hirsutum HOM05D006789 ORTHO05D008460 8.1e-72 274.2 210 68.1
Lalb_Chr15g0079361 Lupinus albus HOM05D006789 ORTHO05D008460 1.1e-71 273.9 205 69.3
PGR044G1098 Punica granatum HOM05D006789 ORTHO05D008460 1.8e-71 273.1 208 70.2
Sabra08G0007400 Salix brachista HOM05D006789 ORTHO05D008460 3.1e-71 272.3 208 72.1
CANSAT56G4131 Cannabis sativa HOM05D006789 ORTHO05D008460 4.0e-71 271.9 212 67.9
Glyma.06G315000 Glycine max HOM05D006789 ORTHO05D008460 1.5e-70 270.0 205 69.8
Prupe.2G061000 Prunus persica HOM05D006789 ORTHO05D008460 3.4e-70 268.9 212 68.4
TAR633G0905 Trochodendron aralioides HOM05D006789 ORTHO05D008460 1.3e-69 266.9 210 67.6
Medtr3g006790 Medicago truncatula HOM05D006789 ORTHO05D008460 2.9e-69 265.8 205 67.8
Hund00694 Selenicereus undatus HOM05D006789 ORTHO05D008460 3.7e-69 265.4 221 66.1
Manes.10G064901 Manihot esculenta HOM05D006789 ORTHO05D008460 6.4e-69 264.6 209 70.3
Haze_03403 Corylus avellana HOM05D006789 ORTHO05D008460 1.1e-68 263.8 237 62.0
Lj3g0008710 Lotus japonicus HOM05D006789 ORTHO05D008460 1.9e-68 263.1 205 67.8
GSVIVG01027313001 Vitis vinifera HOM05D006789 ORTHO05D008460 1.9e-68 263.1 177 74.6
TPR.G25521 Trifolium pratense HOM05D006789 ORTHO05D008460 2.4e-68 262.7 205 68.3
EL10Ac4g08777 Beta vulgaris HOM05D006789 ORTHO05D008460 5.4e-68 261.5 210 65.7
VMungo0647G0732 Vigna mungo HOM05D006789 ORTHO05D008460 9.2e-68 260.8 205 68.3
Glyma.04G129000 Glycine max HOM05D006789 ORTHO05D008460 1.6e-67 260.0 205 67.8
Lsat_1_v5_gn_2_28141 Lactuca sativa HOM05D006789 ORTHO05D008460 4.6e-67 258.5 207 67.6
HanXRQChr06g0181521 Helianthus annuus HOM05D006789 ORTHO05D008460 1.0e-66 257.3 210 67.1
MBI19_g19122_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.0e-66 257.3 179 73.2
MD02G1265000 Malus domestica HOM05D006789 ORTHO05D008460 1.0e-66 257.3 218 64.7
DCAR_006626 Daucus carota HOM05D006789 ORTHO05D008460 1.3e-66 256.9 207 65.2
Eucgr.J00312 Eucalyptus grandis HOM05D006789 ORTHO05D008460 1.7e-66 256.5 200 66.5
Rhsim07G0072100 Rhododendron simsii HOM05D006789 ORTHO05D008460 3.0e-66 255.8 221 64.3
Phvul.008G161900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 3.9e-66 255.4 206 66.0
SalBow4G0168 Salvia bowleyana HOM05D006789 ORTHO05D008460 3.9e-66 255.4 222 62.2
vmacro13786 Vaccinium macrocarpon HOM05D006789 ORTHO05D008460 3.9e-66 255.4 230 63.0
Oeu013184.1 Olea europaea HOM05D006789 ORTHO05D008460 6.6e-66 254.6 213 64.8
Peaxi162Scf00217g00626 Petunia axillaris HOM05D006789 ORTHO05D008460 3.3e-65 252.3 210 63.8
MSTRG.5084 Avicennia marina HOM05D006789 ORTHO05D008460 9.6e-65 250.8 217 62.7
BcaC06g32200 Brassica carinata HOM05D006789 ORTHO05D008460 1.2e-64 250.4 210 61.4
THA.LOC104826955 Tarenaya hassleriana HOM05D006789 ORTHO05D008460 2.1e-64 249.6 214 61.2
SGA_v2.0_scaffold196G40989 Striga asiatica HOM05D006789 ORTHO05D008460 3.6e-64 248.8 198 66.2
A10p31220 Brassica napus HOM05D006789 ORTHO05D008460 4.7e-64 248.4 211 62.6
BraA10t45166Z Brassica rapa HOM05D006789 ORTHO05D008460 4.7e-64 248.4 211 62.1
Thhalv10014633m.g Eutrema salsugineum HOM05D006789 ORTHO05D008460 6.2e-64 248.1 213 61.0
AL6G14600 Arabidopsis lyrata HOM05D006789 ORTHO05D008460 8.1e-64 247.7 217 60.4
AT5G04910 Arabidopsis thaliana HOM05D006789 ORTHO05D008460 8.1e-64 247.7 217 60.8
Sc22g0002280 Simmondsia chinensis HOM05D006789 ORTHO05D001455 8.1e-64 247.7 200 66.5
Carub.0006s0385 Capsella rubella HOM05D006789 ORTHO05D008460 1.1e-63 247.3 210 62.4
Sp6g37890 Schrenkiella parvula HOM05D006789 ORTHO05D008460 1.1e-63 247.3 211 60.7
C09p71840 Brassica napus HOM05D006789 ORTHO05D008460 1.8e-63 246.5 211 62.1
BolC9t59933H Brassica oleracea HOM05D006789 ORTHO05D008460 3.1e-63 245.7 211 62.1
ECA238G4254 Erigeron canadensis HOM05D006789 ORTHO05D008460 1.2e-62 243.8 207 65.7
FvH4_7g05010 Fragaria vesca HOM05D006789 ORTHO05D008460 1.2e-62 243.8 210 62.4
Nn2g14746 Nelumbo nucifera HOM05D006789 ORTHO05D008460 1.5e-62 243.4 176 71.0
SGA_v2.0_scaffold196G40996 Striga asiatica HOM05D006789 ORTHO05D008460 3.4e-62 242.3 198 64.6
RcHm_v2.0_Chr1g0331321 Rosa chinensis HOM05D006789 ORTHO05D008460 5.8e-62 241.5 216 60.6
Solyc10g039380.2 Solanum lycopersicum HOM05D006789 ORTHO05D008460 5.8e-62 241.5 205 63.4
Sopen10g012840 Solanum pennellii HOM05D006789 ORTHO05D008460 5.8e-62 241.5 205 63.4
FAN06G2149 Fragaria x ananassa HOM05D006789 ORTHO05D008460 9.9e-62 240.7 216 60.6
Aqoxy1G00021 Aquilegia oxysepala HOM05D006789 ORTHO05D008460 1.7e-61 240.0 176 68.8
COL.COLO4_28906 Corchorus olitorius HOM05D006789 ORTHO05D008460 4.2e-60 235.3 156 75.6
Actinidia19614 Actinidia chinensis HOM05D000583 ORTHO05D000442 1.6e-59 233.4 168 74.4
Gorai.010G208300 Gossypium raimondii HOM05D006789 ORTHO05D008460 4.6e-59 231.9 156 74.4
Gorai.N006000 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.3e-58 230.3 156 73.7
CSS0000309 Camellia sinensis var. sinensis HOM05D006789 ORTHO05D008460 1.7e-58 229.9 288 50.3
Hma1.2p1_0892F.1_g233220 Hydrangea macrophylla HOM05D006789 ORTHO05D008460 3.0e-58 229.2 150 78.7
PSO339G2606 Papaver somniferum HOM05D006789 ORTHO05D008460 5.1e-58 228.4 207 60.4
Aa31LG11G5790 Aethionema arabicum HOM05D006789 ORTHO05D008460 6.6e-58 228.0 218 58.3
CDE08G0307 Ceratophyllum demersum HOM05D006789 ORTHO05D008460 7.3e-57 224.6 178 65.7
Nitab4.5_0004033g0070 Nicotiana tabacum HOM05D006789 ORTHO05D008460 7.3e-57 224.6 155 73.5
Cc02_g32010 Coffea canephora HOM05D006789 ORTHO05D008460 1.6e-56 223.4 158 73.4
Migut.N01877 Erythranthe guttata HOM05D006789 ORTHO05D008460 4.8e-56 221.9 212 59.9
Zm00001eb128210 Zea mays HOM05D006789 ORTHO05D008460 4.8e-56 221.9 176 65.3
Gohir.A06G170906 Gossypium hirsutum HOM05D006789 ORTHO05D008460 1.1e-55 220.7 157 71.3
Os01g0265700 Oryza sativa ssp. japonica HOM05D006789 ORTHO05D008460 1.1e-55 220.7 173 64.7
FAN03G1759 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.4e-55 220.3 214 61.2
PSO384G0303 Papaver somniferum HOM05D006789 ORTHO05D008460 2.4e-55 219.5 207 58.5
Nitab4.5_0002156g0010 Nicotiana tabacum HOM05D006789 ORTHO05D008460 9.0e-55 217.6 155 71.6
Lj7C491T7 Lonicera japonica HOM05D006789 ORTHO05D008460 3.4e-54 215.7 152 75.0
Gohir.D06G178832 Gossypium hirsutum HOM05D006789 ORTHO05D008460 3.2e-52 209.1 146 70.5
ATR0068G087 Amborella trichopoda HOM05D006789 ORTHO05D008460 9.3e-52 207.6 148 69.6
Carub.0010s0003 Capsella rubella HOM05D006789 ORTHO05D008460 7.3e-49 198.0 163 62.6
FAN01G0280 Fragaria x ananassa HOM05D006789 ORTHO05D008460 1.3e-48 197.2 210 55.7
unitig_26.g9495 Utricularia gibba HOM05D006789 ORTHO05D008460 1.6e-48 196.8 176 58.0
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 6.2e-48 194.9 148 68.2
SEGI_32817 Sequoiadendron giganteum HOM05D006789 ORTHO05D008460 4.0e-47 192.2 157 61.8
AUR62014306 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.2e-43 180.6 181 57.5
Psat5g230200 Pisum sativum HOM05D006789 ORTHO05D008460 1.6e-43 180.3 119 78.2
MBI05_g14944_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 4.6e-43 178.7 143 63.6
Pp3c10_8520 Physcomitrium patens HOM05D006789 ORTHO05D008460 3.4e-38 162.5 172 51.7
Actinidia29655 Actinidia chinensis HOM05D006789 ORTHO05D008460 6.5e-37 158.3 199 49.2
Cfa010449 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.1e-31 141.0 121 62.0
Gorai.010G208600 Gossypium raimondii HOM05D006789 ORTHO05D008460 1.5e-30 137.1 143 55.9
CARHR208350 Cardamine hirsuta HOM05D006789 ORTHO05D008460 3.4e-30 136.0 87 73.6
Ca_14025_v3 Cicer arietinum L. HOM05D006789 ORTHO05D008460 6.5e-29 131.7 118 57.6
Mapoly0023s0087 Marchantia polymorpha HOM05D006789 ORTHO05D008460 1.4e-28 130.6 174 44.3
TAR633G1630 Trochodendron aralioides HOM05D006789 ORTHO05D008460 2.5e-28 129.8 81 79.0
SMO364G0543 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 5.5e-28 128.6 181 44.8
TAR629G1007 Trochodendron aralioides HOM05D001508 ORTHO05D008460 7.1e-28 128.3 79 79.7
SMO353G0288 Selaginella moellendorffii HOM05D006789 ORTHO05D008460 1.8e-23 113.6 172 44.2
TAR636G3403 Trochodendron aralioides HOM05D006789 ORTHO05D008460 5.3e-23 112.1 72 77.8
Cfa005731 Carpinus fangiana HOM05D012552 ORTHO05D018926 3.0e-18 96.3 82 59.8
CBR_g54451 Chara braunii HOM05D003248 ORTHO05D000301 3.0e-18 96.3 239 30.1
BcaB03g15210 Brassica carinata HOM05D006789 ORTHO05D008460 5.1e-18 95.5 65 67.7
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.2e-16 90.1 84 58.3
Phvul.005G010900 Phaseolus vulgaris HOM05D006789 ORTHO05D008460 5.3e-15 85.5 102 51.0
AUR62034099 Chenopodium quinoa HOM05D006789 ORTHO05D008460 1.0e-13 81.3 61 72.1
SHI21242 Sapria himalayana HOM05D006789 ORTHO05D008460 1.1e-12 77.8 56 64.3
Cre16.g683483 Chlamydomonas reinhardtii HOM05D006789 ORTHO05D008460 7.9e-11 71.6 96 43.8
Cfa010304 Carpinus fangiana HOM05D012552 ORTHO05D018926 6.7e-10 68.6 85 50.6
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 5.7e-09 65.5 72 45.8


User provided reference genes

Program Settings