Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 0.0e+00 1110.9 553 100.0
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 0.0e+00 1084.3 553 96.6
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 0.0e+00 1082.8 553 96.6
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 2.9e-294 1014.6 553 91.9
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 8.4e-294 1013.1 553 91.0
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 9.0e-264 913.3 554 81.6
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 5.1e-259 897.5 557 79.5
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 2.2e-257 892.1 551 79.9
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 8.8e-251 870.2 555 78.6
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.5e-250 869.4 556 77.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 3.3e-250 868.2 557 77.9
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 3.7e-249 864.8 554 76.4
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 6.3e-249 864.0 558 77.6
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.1e-248 863.2 554 77.6
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.4e-248 862.1 518 82.0
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 3.1e-248 861.7 558 78.1
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 4.5e-247 857.8 519 80.7
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 7.7e-247 857.1 560 77.7
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.7e-246 855.9 516 81.8
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 2.5e-245 852.0 539 78.5
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 5.5e-245 850.9 567 74.1
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 9.4e-245 850.1 516 81.2
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.6e-244 849.4 560 76.2
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.1e-244 849.0 567 73.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.6e-244 848.2 516 81.2
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.0e-243 846.7 558 76.3
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 1.4e-243 846.3 548 76.6
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.8e-243 845.9 549 75.4
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-243 845.1 560 75.0
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.5e-242 842.8 516 80.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-242 842.4 516 80.6
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.0e-242 842.4 521 80.2
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 1.7e-241 839.3 556 76.8
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 6.3e-241 837.4 556 76.4
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 2.4e-240 835.5 556 76.4
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 5.3e-240 834.3 489 82.8
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 9.1e-240 833.6 558 75.3
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 2.0e-239 832.4 545 77.1
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 1.0e-238 830.1 560 73.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.3e-238 829.7 556 76.1
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 1.9e-237 825.9 489 81.4
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 2.5e-237 825.5 557 75.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 4.2e-237 824.7 554 75.1
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.2e-236 823.2 556 75.2
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 6.1e-236 820.8 557 74.5
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 8.0e-236 820.5 561 74.3
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 1.4e-235 819.7 555 74.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.8e-235 819.3 516 77.9
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.3e-235 818.9 561 74.9
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.0e-235 818.5 530 76.6
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 3.9e-235 818.1 561 74.7
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.5e-234 816.2 517 76.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.6e-234 815.5 537 75.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.4e-234 814.7 559 73.9
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 5.7e-234 814.3 542 75.8
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 7.4e-234 813.9 556 73.9
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 9.7e-234 813.5 532 74.8
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 4.8e-233 811.2 557 73.4
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.3e-233 810.8 553 74.1
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 8.2e-233 810.4 556 74.3
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 2.2e-230 802.4 535 75.0
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 1.1e-229 800.0 511 77.3
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 1.9e-229 799.3 560 70.7
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 2.5e-229 798.9 554 72.9
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 4.2e-229 798.1 556 72.3
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 4.2e-229 798.1 558 72.9
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 4.7e-228 794.7 553 73.2
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 8.8e-227 790.4 564 70.4
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 2.6e-226 788.9 560 70.7
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 3.7e-225 785.0 530 73.8
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.8e-225 784.6 555 71.4
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.1e-224 783.5 532 73.1
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 1.8e-224 782.7 527 73.6
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-224 782.3 518 74.1
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 3.1e-224 781.9 559 71.6
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 2.7e-223 778.9 521 76.8
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 2.7e-223 778.9 530 73.4
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 4.5e-223 778.1 560 70.2
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.0e-222 776.9 545 71.6
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.0e-222 776.9 518 73.9
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 8.5e-222 773.9 547 72.0
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 1.1e-221 773.5 523 75.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.9e-221 772.7 521 75.2
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.5e-221 771.2 469 78.5
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.1e-220 769.2 596 67.8
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.1e-220 769.2 640 63.0
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.6e-220 768.5 555 71.2
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.6e-220 768.5 554 70.4
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.4e-219 766.5 561 67.4
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.0e-219 765.4 552 69.7
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 2.6e-218 762.3 543 71.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 9.8e-218 760.4 551 71.0
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.8e-218 760.4 536 71.1
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 4.8e-217 758.1 553 70.2
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 8.3e-217 757.3 559 68.9
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.4e-216 756.5 559 69.1
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 7.0e-216 754.2 563 69.6
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.3e-214 750.0 549 69.2
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 2.3e-214 749.2 523 70.2
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 5.0e-214 748.0 487 75.4
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 8.6e-214 747.3 555 69.0
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.5e-213 745.7 560 67.0
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 4.2e-213 745.0 555 68.8
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 4.2e-213 745.0 521 73.1
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 9.5e-213 743.8 535 70.3
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 1.2e-212 743.4 555 68.5
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.2e-212 743.4 560 67.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 8.0e-212 740.7 541 68.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-210 736.5 552 67.0
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.5e-210 736.5 552 67.0
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 2.0e-210 736.1 554 68.4
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 4.9e-209 731.5 555 67.2
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.8e-208 729.6 463 76.5
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.0e-203 713.8 547 68.6
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 8.9e-203 710.7 551 68.4
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 2.7e-199 699.1 405 82.2
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.9e-198 695.3 570 64.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 1.4e-195 686.8 536 65.3
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 2.4e-192 676.0 512 67.8
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.5e-186 656.8 402 77.1
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 6.4e-185 651.4 562 60.1
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.4e-184 649.4 566 61.0
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 9.3e-176 620.9 504 63.9
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.8e-172 608.6 532 61.1
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 5.3e-171 605.1 558 58.4
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.2e-168 595.5 556 59.7
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.5e-165 586.3 502 60.2
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 1.8e-163 580.1 434 68.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 9.3e-160 567.8 555 54.6
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-158 563.1 375 75.7
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 7.4e-157 558.1 548 53.8
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 5.3e-155 552.0 432 68.8
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 6.9e-147 525.0 359 73.5
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.5e-146 523.9 477 58.3
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 8.5e-137 491.5 565 48.5
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 3.3e-133 479.6 379 67.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 6.9e-131 471.9 544 48.5
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.5e-130 470.7 575 46.6
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.8e-126 457.2 386 63.7
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.7e-100 370.9 306 56.5
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 9.2e-99 365.2 500 43.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 3.5e-98 363.2 567 38.8
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 7.7e-98 362.1 324 61.1
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 6.8e-70 269.2 165 81.8
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 3.3e-64 250.4 311 48.2
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 1.2e-58 231.9 466 32.4
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 6.6e-57 226.1 253 53.4
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 6.0e-50 203.0 415 33.7
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 3.3e-48 197.2 155 71.0
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.4e-46 191.8 379 36.4
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.1e-46 190.7 463 31.1
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 5.8e-45 186.4 170 69.4
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.2e-44 184.5 91 91.2
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 2.9e-44 184.1 109 82.6
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 4.2e-43 180.3 97 83.5
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.0e-41 174.1 164 56.1
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 7.4e-40 169.5 118 69.5
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 2.1e-39 167.9 412 30.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 2.7e-34 151.0 155 54.2
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-22 112.5 86 59.3
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 5.0e-20 103.6 163 40.5
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 6.3e-15 86.7 40 97.5
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 1.5e-13 82.0 40 92.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.7e-12 78.6 45 77.8
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 1.0e-09 69.3 33 87.9
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 3.9e-09 67.4 32 90.6
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 6.7e-09 66.6 57 56.1
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 4.8e-07 60.5 98 38.8
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 1.8e-06 58.5 225 26.7
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 7.0e-06 56.6 243 22.6
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 7.0e-06 56.6 243 22.6


User provided reference genes

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