Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 8.0e-77 290.4 155 100.0
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 3.0e-55 218.8 187 71.1
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 3.9e-47 191.8 114 93.0
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 5.8e-43 177.9 132 77.3
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 9.0e-28 127.5 129 63.6
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 3.4e-27 125.6 123 65.0
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 3.2e-25 119.0 144 52.8
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 4.2e-25 118.6 97 71.1
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 2.1e-24 116.3 121 62.0
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 7.9e-24 114.4 84 78.6
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.8e-23 113.2 81 77.8
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 2.3e-23 112.8 133 60.2
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 3.0e-23 112.5 114 63.2
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 5.1e-23 111.7 96 68.8
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 5.1e-23 111.7 86 75.6
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 6.7e-23 111.3 130 56.9
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 6.7e-23 111.3 123 58.5
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 8.7e-23 110.9 75 80.0
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 8.7e-23 110.9 121 60.3
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 1.5e-22 110.2 126 53.2
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.5e-22 109.4 125 61.6
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.5e-22 109.4 125 61.6
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.3e-21 107.1 77 77.9
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 1.6e-21 106.7 100 59.0
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 2.8e-21 105.9 125 58.4
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 6.2e-21 104.8 150 53.3
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 6.2e-21 104.8 80 70.0
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.1e-20 104.0 138 54.3
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.4e-20 103.6 128 55.5
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.8e-20 103.2 80 75.0
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 2.4e-20 102.8 125 55.2
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 4.0e-20 102.1 113 54.9
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 5.3e-20 101.7 106 59.4
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 1.2e-19 100.5 97 57.7
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.2e-19 100.5 106 59.4
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.5e-19 100.1 114 59.6
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 2.6e-19 99.4 113 54.9
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 2.6e-19 99.4 131 52.7
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.4e-19 99.0 150 51.3
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 4.5e-19 98.6 73 75.3
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 5.8e-19 98.2 131 56.5
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 7.6e-19 97.8 141 53.9
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.0e-18 97.4 136 50.7
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 1.0e-18 97.4 115 58.3
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.3e-18 97.1 124 51.6
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 2.9e-18 95.9 77 74.0
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 3.8e-18 95.5 145 49.0
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 3.8e-18 95.5 126 51.6
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 5.0e-18 95.1 73 72.6
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 5.0e-18 95.1 150 50.0
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 5.0e-18 95.1 92 63.0
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 6.5e-18 94.7 126 50.8
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 8.4e-18 94.4 86 64.0
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 8.4e-18 94.4 77 68.8
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.1e-17 94.0 121 54.5
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 1.1e-17 94.0 121 54.5
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 2.5e-17 92.8 65 75.4
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.2e-17 92.0 119 52.1
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 4.2e-17 92.0 150 49.3
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 5.5e-17 91.7 117 55.6
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 5.5e-17 91.7 108 55.6
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 7.1e-17 91.3 74 71.6
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 9.3e-17 90.9 67 80.6
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 9.3e-17 90.9 67 80.6
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.6e-16 90.1 82 68.3
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 2.7e-16 89.4 153 40.5
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 2.7e-16 89.4 73 69.9
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 6.1e-16 88.2 96 57.3
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 7.9e-16 87.8 75 61.3
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 1.0e-15 87.4 61 70.5
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.3e-15 87.0 78 67.9
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 1.3e-15 87.0 114 55.3
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 1.3e-15 87.0 99 59.6
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 2.3e-15 86.3 111 54.1
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 3.0e-15 85.9 104 56.7
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.5e-14 83.6 106 55.7
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 2.5e-14 82.8 124 50.8
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.7e-13 79.0 97 59.8
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.7e-13 79.0 97 59.8
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 1.1e-12 77.4 108 51.9
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 2.4e-12 76.3 59 79.7
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 5.3e-12 75.1 59 78.0
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.2e-11 73.9 92 46.7
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.4e-09 67.0 90 48.9
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 1.4e-09 67.0 74 52.7
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 3.2e-09 65.9 116 39.7
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 5.5e-09 65.1 82 52.4
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 9.4e-09 64.3 46 63.0
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 2.7e-08 62.8 78 52.6
MBI17_g15050_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 3.0e-07 59.3 71 45.1
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 3.9e-07 58.9 95 46.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 8.8e-07 57.8 44 56.8


User provided reference genes

Program Settings