Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 2.9e-85 318.5 162 100.0
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 9.3e-60 233.8 171 76.6
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 2.1e-56 222.6 162 75.3
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 1.4e-55 219.9 164 74.4
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 1.6e-43 179.9 158 60.8
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 2.7e-43 179.1 163 62.0
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 2.7e-43 179.1 163 62.0
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 7.9e-43 177.6 161 58.4
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 3.0e-42 175.6 161 60.9
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 5.1e-42 174.9 161 59.6
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 5.1e-42 174.9 163 60.7
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 5.1e-42 174.9 161 60.9
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 6.7e-42 174.5 151 62.3
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 6.7e-42 174.5 161 59.6
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 1.5e-41 173.3 158 60.1
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 2.5e-41 172.6 155 59.4
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 5.7e-41 171.4 151 62.9
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.3e-40 170.2 127 67.7
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 2.8e-40 169.1 156 59.6
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 3.7e-40 168.7 149 61.1
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 3.1e-39 165.6 158 57.0
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 4.1e-39 165.2 153 60.1
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 9.1e-39 164.1 162 54.3
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 9.1e-39 164.1 151 57.0
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 1.2e-38 163.7 161 56.5
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 2.0e-38 162.9 143 59.4
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 2.6e-38 162.5 140 62.1
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 2.6e-38 162.5 162 56.8
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 3.4e-38 162.2 156 57.7
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.4e-38 162.2 143 59.4
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 3.4e-38 162.2 143 59.4
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 3.4e-38 162.2 140 59.3
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 4.5e-38 161.8 158 58.2
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 4.5e-38 161.8 161 54.7
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 5.9e-38 161.4 161 57.1
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 7.7e-38 161.0 162 53.7
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 7.7e-38 161.0 155 58.7
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 1.0e-37 160.6 162 53.7
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 1.3e-37 160.2 158 54.4
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 1.7e-37 159.8 158 55.1
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 2.2e-37 159.5 142 60.6
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 2.2e-37 159.5 161 55.3
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 2.2e-37 159.5 151 58.3
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 2.2e-37 159.5 144 58.3
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 2.9e-37 159.1 134 60.4
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 2.9e-37 159.1 149 56.4
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 3.8e-37 158.7 194 50.5
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 3.8e-37 158.7 131 62.6
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 5.0e-37 158.3 157 54.1
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 1.1e-36 157.1 146 58.2
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 2.5e-36 156.0 160 57.5
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 2.5e-36 156.0 140 57.9
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 2.5e-36 156.0 158 53.8
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 3.2e-36 155.6 163 53.4
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 4.2e-36 155.2 157 54.8
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 4.2e-36 155.2 127 61.4
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 4.2e-36 155.2 130 60.8
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 4.2e-36 155.2 171 48.5
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 4.2e-36 155.2 158 53.8
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 1.2e-35 153.7 146 57.5
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 1.2e-35 153.7 147 54.4
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 1.6e-35 153.3 152 55.3
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 2.1e-35 152.9 161 52.8
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 2.1e-35 152.9 131 59.5
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 3.6e-35 152.1 142 55.6
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 4.7e-35 151.8 124 62.1
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 4.7e-35 151.8 124 62.1
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 4.7e-35 151.8 124 62.1
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 4.7e-35 151.8 124 62.1
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 6.1e-35 151.4 127 60.6
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 6.1e-35 151.4 153 54.2
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 7.9e-35 151.0 158 52.5
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 1.0e-34 150.6 155 53.5
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 1.4e-34 150.2 138 58.0
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.4e-34 150.2 158 51.9
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 1.4e-34 150.2 158 51.9
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 1.8e-34 149.8 158 54.4
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 2.3e-34 149.4 161 49.7
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 3.0e-34 149.1 154 52.6
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 3.0e-34 149.1 151 53.6
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 3.0e-34 149.1 136 57.4
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 3.9e-34 148.7 158 51.3
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 6.7e-34 147.9 125 60.0
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 6.7e-34 147.9 127 59.1
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 6.7e-34 147.9 128 60.9
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 8.8e-34 147.5 127 59.1
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 2.0e-33 146.4 158 50.0
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 3.3e-33 145.6 133 55.6
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 4.4e-33 145.2 151 51.7
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 4.4e-33 145.2 159 52.8
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 4.4e-33 145.2 151 49.0
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 5.7e-33 144.8 144 53.5
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 5.7e-33 144.8 139 51.1
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 7.4e-33 144.4 130 56.2
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 1.7e-32 143.3 149 55.0
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 2.2e-32 142.9 159 49.1
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 2.8e-32 142.5 161 51.6
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 2.4e-31 139.4 129 52.7
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 4.1e-31 138.7 132 52.3
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 5.3e-31 138.3 71 95.8
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.5e-30 135.6 135 55.6
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 1.0e-29 134.0 146 45.9
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 2.7e-27 125.9 125 56.0
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 6.1e-27 124.8 125 56.0
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 1.1e-25 120.6 111 57.7
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 9.7e-25 117.5 66 83.3
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 1.7e-24 116.7 137 48.9
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 4.1e-23 112.1 132 48.5
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 1.2e-22 110.5 133 43.6
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 2.0e-22 109.8 66 75.8
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 7.7e-22 107.8 114 54.4
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 1.0e-21 107.5 67 73.1
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 2.2e-21 106.3 64 73.4
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 8.5e-21 104.4 101 56.4
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 3.2e-20 102.4 104 51.9
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 1.7e-16 90.1 66 66.7
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 1.6e-14 83.6 82 54.9
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 7.7e-14 81.3 60 65.0
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 1.3e-13 80.5 104 44.2
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 3.8e-13 79.0 130 36.9
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 4.2e-12 75.5 128 31.2
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 1.2e-11 73.9 129 33.3
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.8e-10 70.1 45 73.3
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 5.7e-09 65.1 120 27.5
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 3.7e-08 62.4 138 31.9


User provided reference genes

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