Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 6.8e-224 780.4 410 100.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 2.6e-207 725.3 408 91.4
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.5e-199 699.5 414 87.4
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 2.2e-182 642.5 443 79.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 6.5e-150 534.6 412 69.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 4.2e-149 531.9 412 68.2
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 8.7e-147 524.2 411 66.2
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.5e-146 523.5 413 67.3
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 3.1e-144 515.8 399 66.7
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 9.0e-144 514.2 411 64.7
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.5e-143 513.5 419 64.2
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.6e-143 512.7 411 65.5
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 5.0e-142 508.4 413 66.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.2e-141 505.8 414 65.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 3.2e-141 505.8 415 64.3
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 9.4e-141 504.2 414 65.0
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.4e-141 504.2 414 65.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.4e-141 504.2 414 64.7
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 2.1e-140 503.1 399 66.4
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.7e-140 502.7 413 64.4
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 4.6e-140 501.9 412 64.1
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 4.6e-140 501.9 412 64.1
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 5.1e-139 498.4 411 65.9
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 2.0e-138 496.5 414 64.5
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 2.5e-138 496.1 412 63.1
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-138 495.4 414 63.5
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 5.7e-138 495.0 413 65.6
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.3e-137 493.8 412 63.3
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 2.2e-137 493.0 412 63.1
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 8.2e-137 491.1 414 62.3
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.1e-136 489.2 412 63.3
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 4.1e-136 488.8 412 63.6
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 2.0e-135 486.5 403 62.8
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 2.0e-135 486.5 408 63.7
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 3.4e-135 485.7 440 59.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.5e-135 485.3 369 67.5
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 7.7e-135 484.6 410 63.2
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.3e-134 483.8 408 63.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 2.9e-134 482.6 411 61.6
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 3.8e-134 482.3 407 62.7
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 5.0e-134 481.9 388 64.9
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 6.5e-134 481.5 415 62.4
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.1e-133 480.7 412 62.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.9e-133 479.9 410 62.4
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 3.2e-133 479.2 412 60.7
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.2e-133 479.2 410 62.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 3.2e-133 479.2 412 61.4
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 5.5e-133 478.4 385 65.2
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.2e-132 477.2 419 61.3
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 1.2e-132 477.2 412 62.1
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.4e-131 473.8 408 62.5
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.3e-131 473.0 412 60.4
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.3e-131 473.0 412 61.4
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.9e-131 472.2 480 54.6
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.7e-129 466.8 376 63.6
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.2e-129 466.5 410 61.0
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 1.1e-128 464.2 414 60.9
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 1.8e-128 463.4 384 63.5
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 4.1e-128 462.2 416 58.9
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.0e-127 459.9 416 58.9
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 4.5e-127 458.8 410 59.3
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.3e-126 457.2 415 59.0
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 7.2e-125 451.4 407 60.7
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 9.4e-125 451.1 412 58.5
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 8.8e-123 444.5 353 66.3
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 2.6e-122 443.0 424 57.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 5.7e-122 441.8 414 57.0
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 5.7e-122 441.8 416 58.9
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 1.3e-121 440.7 418 60.8
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 3.1e-120 436.0 401 58.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 9.1e-120 434.5 409 55.0
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.2e-119 434.1 419 57.0
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 6.5e-118 428.3 421 55.8
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 5.5e-117 425.2 420 56.4
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 9.4e-117 424.5 420 56.7
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.2e-116 424.1 389 55.0
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 3.6e-116 422.5 410 55.1
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 3.6e-116 422.5 327 68.2
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 8.0e-116 421.4 413 54.7
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.3e-115 419.9 401 54.1
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 4.0e-115 419.1 421 55.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 3.4e-114 416.0 419 55.6
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 3.4e-114 416.0 350 62.9
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 4.4e-114 415.6 419 55.6
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 5.7e-114 415.2 420 55.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 7.5e-114 414.8 395 57.5
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 1.7e-113 413.7 421 57.5
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 4.1e-112 409.1 422 54.0
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 4.1e-112 409.1 368 56.5
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.6e-111 407.1 418 52.9
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.6e-111 407.1 362 59.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 5.9e-111 405.2 400 53.2
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 7.7e-111 404.8 346 62.1
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 5.0e-110 402.1 370 57.8
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 6.5e-110 401.7 396 55.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 4.7e-108 395.6 419 53.2
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.8e-107 393.7 349 61.3
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 3.0e-107 392.9 351 59.5
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.9e-105 385.6 419 52.0
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 4.9e-105 385.6 360 56.1
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.9e-103 378.6 429 49.2
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.0e-99 367.9 467 44.3
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.8e-99 367.1 480 43.5
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.7e-98 362.1 300 66.0
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 2.1e-92 343.6 356 52.2
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 4.4e-82 309.3 473 39.3
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.5e-79 299.7 373 44.5
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 4.6e-79 299.3 470 39.1
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 8.6e-78 295.0 266 58.3
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 8.4e-73 278.5 222 64.4
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 3.2e-72 276.6 317 48.9
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 9.6e-69 265.0 353 46.5
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.8e-66 255.8 193 68.9
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 2.7e-63 246.9 195 66.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.6e-62 242.3 182 67.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.3e-60 238.0 279 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 3.6e-60 236.5 400 37.8
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 6.6e-54 215.7 157 69.4
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 5.5e-48 196.1 231 49.8
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 6.5e-41 172.6 133 67.7
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.8e-38 164.5 134 65.7
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 3.3e-37 160.2 401 30.2
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.8e-35 154.5 323 31.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.6e-34 150.6 145 55.2
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.8e-33 146.7 118 66.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.2e-32 143.3 298 32.6
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 1.1e-29 135.2 94 70.2
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.9e-29 134.4 274 35.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.8e-28 130.6 139 51.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.7e-25 121.3 167 43.7
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.2e-20 104.4 76 68.4
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.8e-19 101.3 332 28.6
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.5e-13 81.6 123 37.4
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 9.1e-11 72.4 105 42.9
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.6e-10 71.6 68 58.8
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 2.0e-10 71.2 95 45.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 4.7e-07 60.1 81 42.0


User provided reference genes

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