Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 6.9e-53 210.3 101 100.0
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.3e-40 168.7 97 82.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.9e-31 139.0 95 71.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 2.9e-27 125.2 79 77.2
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.5e-26 120.9 91 64.8
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.5e-23 112.8 85 61.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.6e-20 102.1 72 66.7
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.9e-19 98.6 90 57.8
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.1e-17 90.9 74 58.1
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 6.7e-16 87.4 60 66.7
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.1e-15 86.7 73 58.9
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 2.0e-15 85.9 66 60.6
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 2.6e-15 85.5 71 60.6
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.4e-15 84.7 91 45.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 9.7e-15 83.6 97 45.4
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.7e-15 83.6 72 61.1
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-14 83.2 74 55.4
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.7e-14 82.8 71 60.6
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.7e-14 82.8 71 60.6
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.7e-14 82.8 71 60.6
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.7e-14 82.8 78 52.6
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.8e-14 82.0 95 46.3
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 3.7e-14 81.6 73 58.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 4.8e-14 81.3 74 54.1
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 4.8e-14 81.3 72 56.9
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 6.3e-14 80.9 77 55.8
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 8.2e-14 80.5 72 59.7
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.1e-13 80.1 93 47.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.4e-13 79.7 67 56.7
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.8e-13 79.3 72 54.2
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.8e-13 79.3 71 60.6
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-13 79.0 71 57.7
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.1e-13 78.6 66 53.0
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.1e-13 78.6 66 63.6
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 9.1e-13 77.0 70 55.7
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 9.1e-13 77.0 71 59.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-12 76.3 71 54.9
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 2.0e-12 75.9 96 42.7
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 2.0e-12 75.9 68 54.4
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 2.0e-12 75.9 95 46.3
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 2.0e-12 75.9 94 47.9
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-12 75.5 84 51.2
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 1.0e-11 73.6 72 54.2
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-11 73.2 67 56.7
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.7e-11 72.8 70 51.4
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.7e-11 72.8 72 52.8
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.7e-11 72.8 91 42.9
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.7e-11 72.8 71 53.5
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 2.2e-11 72.4 68 54.4
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 6.5e-11 70.9 78 46.2
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 6.5e-11 70.9 67 58.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 6.5e-11 70.9 81 45.7
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 8.5e-11 70.5 89 48.3
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.1e-10 70.1 69 50.7
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 1.1e-10 70.1 70 50.0
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.1e-10 70.1 86 46.5
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 1.5e-10 69.7 51 62.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.5e-10 69.7 75 53.3
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.5e-10 69.7 54 64.8
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.9e-10 69.3 75 49.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.9e-10 69.3 84 40.5
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.9e-10 69.3 84 40.5
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.9e-10 69.3 85 48.2
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.5e-10 68.9 50 64.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.5e-10 68.9 92 45.7
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.5e-10 68.9 63 57.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 3.2e-10 68.6 92 45.7
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.2e-10 68.6 92 45.7
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.2e-10 68.6 93 41.9
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.2e-10 68.6 63 57.1
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.2e-10 68.2 63 55.6
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 5.5e-10 67.8 97 45.4
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 5.5e-10 67.8 67 47.8
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 7.2e-10 67.4 62 53.2
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 7.2e-10 67.4 72 48.6
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.2e-10 67.4 71 52.1
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-09 65.5 92 44.6
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.7e-09 65.5 75 52.0
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.6e-09 65.1 72 51.4
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.7e-09 64.7 92 43.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.7e-09 64.7 41 65.9
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.1e-09 64.3 48 58.3
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 8.0e-09 63.9 90 40.0
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 8.0e-09 63.9 90 36.7
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.0e-09 63.9 72 56.9
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.0e-08 63.5 89 42.7
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.0e-08 63.5 93 44.1
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 1.0e-08 63.5 56 53.6
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.0e-08 63.5 60 53.3
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.4e-08 63.2 66 50.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.4e-08 63.2 48 60.4
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.8e-08 62.8 46 63.0
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.8e-08 62.8 48 66.7
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 2.3e-08 62.4 95 37.9
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 3.0e-08 62.0 69 49.3
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 3.0e-08 62.0 43 65.1
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 3.0e-08 62.0 63 47.6
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.0e-08 61.6 76 47.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 6.7e-08 60.8 61 44.3
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 8.8e-08 60.5 74 45.9
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 1.1e-07 60.1 60 51.7
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-07 60.1 86 45.3
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 1.5e-07 59.7 37 67.6
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.5e-07 59.7 86 45.3
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.5e-07 59.7 50 58.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 2.0e-07 59.3 51 60.8
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.0e-07 59.3 86 45.3
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 2.0e-07 59.3 84 42.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.0e-07 59.3 62 41.9
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.6e-07 58.9 83 44.6
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 2.6e-07 58.9 80 42.5
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.6e-07 58.9 64 46.9
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 4.4e-07 58.2 44 61.4
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 4.4e-07 58.2 80 42.5
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 5.7e-07 57.8 95 41.1
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 7.5e-07 57.4 59 52.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 7.5e-07 57.4 61 42.6
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 9.7e-07 57.0 40 62.5
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 9.7e-07 57.0 57 49.1
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 9.7e-07 57.0 109 34.9
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 9.7e-07 57.0 46 58.7
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 9.7e-07 57.0 86 38.4
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.3e-06 56.6 41 61.0
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.3e-06 56.6 94 35.1
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 1.7e-06 56.2 80 40.0
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 2.2e-06 55.8 79 40.5
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 2.2e-06 55.8 53 54.7
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.2e-06 55.8 75 42.7
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.8e-06 55.5 79 39.2
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.8e-06 55.5 79 39.2
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.8e-06 55.5 54 46.3
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.7e-06 55.1 54 48.1
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 3.7e-06 55.1 41 58.5
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 6.3e-06 54.3 54 53.7
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 6.3e-06 54.3 71 45.1
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 6.3e-06 54.3 71 45.1
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 6.3e-06 54.3 77 39.0


User provided reference genes

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