Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G019130 Citrullus lanatus HOM05D002134 ORTHO05D008658 0.0e+00 1409.8 818 100.0
MELO3C003852.2 Cucumis melo HOM05D002134 ORTHO05D008658 0.0e+00 1169.5 820 83.7
CsaV3_3G045010 Cucumis sativus L. HOM05D002134 ORTHO05D008658 0.0e+00 1115.1 819 81.7
Sed0018102 Sechium edule HOM05D002134 ORTHO05D008658 2.1e-285 985.7 820 74.6
Sed0020001 Sechium edule HOM05D002134 ORTHO05D008658 8.7e-239 830.9 687 74.5
Haze_17986 Corylus avellana HOM05D002134 ORTHO05D008658 1.0e-138 498.4 933 43.9
Cfa018138 Carpinus fangiana HOM05D002134 ORTHO05D008658 8.7e-138 495.4 902 43.5
QL02p007944 Quercus lobata HOM05D002134 ORTHO05D008658 1.4e-135 488.0 861 45.9
Dinv36064 Davidia involucrata HOM05D002134 ORTHO05D008658 3.5e-123 446.8 833 42.1
CiPaw.15G075800 Carya illinoinensis HOM05D002134 ORTHO05D008658 7.4e-121 439.1 698 46.0
GSVIVG01009687001 Vitis vinifera HOM05D002134 ORTHO05D008658 7.4e-121 439.1 859 41.3
CANSAT25G1781 Cannabis sativa HOM05D002134 ORTHO05D008658 1.3e-117 428.3 845 41.8
Atru.chr8.2604 Acer truncatum HOM05D002134 ORTHO05D008658 8.4e-117 425.6 845 40.9
Atru.chr13.512 Acer truncatum HOM05D002134 ORTHO05D008658 2.1e-115 421.0 859 39.9
Nn5g29542 Nelumbo nucifera HOM05D002134 ORTHO05D008658 2.7e-115 420.6 882 40.4
TWI12G0094 Tripterygium wilfordii HOM05D002134 ORTHO05D008658 2.7e-115 420.6 826 41.8
Ciclev10000375m.g Citrus clementina HOM05D002134 ORTHO05D008658 9.7e-113 412.1 843 41.5
Manes.05G161600 Manihot esculenta HOM05D002134 ORTHO05D008658 2.2e-112 411.0 846 39.8
Prupe.1G381400 Prunus persica HOM05D002134 ORTHO05D008658 2.4e-111 407.5 755 42.9
MD08G1033500 Malus domestica HOM05D002134 ORTHO05D008658 1.5e-110 404.8 902 40.9
Eucgr.F01907 Eucalyptus grandis HOM05D002134 ORTHO05D008658 6.5e-109 399.4 837 41.0
Actinidia38014 Actinidia chinensis HOM05D002134 ORTHO05D008658 2.5e-108 397.5 628 44.7
TAR376G0546 Trochodendron aralioides HOM05D002134 ORTHO05D008658 7.2e-108 396.0 870 39.2
Sabra02G0199600 Salix brachista HOM05D002134 ORTHO05D008658 7.9e-107 392.5 839 38.7
vmacro04518 Vaccinium macrocarpon HOM05D002134 ORTHO05D008658 7.9e-107 392.5 948 38.5
Potri.002G262800 Populus trichocarpa HOM05D002134 ORTHO05D008658 3.0e-106 390.6 677 43.0
Medtr3g111740 Medicago truncatula HOM05D002134 ORTHO05D008658 1.9e-105 387.9 839 40.2
Ca_15521_v3 Cicer arietinum L. HOM05D002134 ORTHO05D008658 3.3e-105 387.1 835 40.4
Lj1g0006718 Lotus japonicus HOM05D002134 ORTHO05D008658 1.2e-102 378.6 823 39.0
Thecc.08G024500 Theobroma cacao HOM05D002134 ORTHO05D008658 3.4e-102 377.1 820 39.6
MD15G1030200 Malus domestica HOM05D002134 ORTHO05D008658 4.5e-102 376.7 887 39.1
Duzib116G0898 Durio zibethinus HOM05D002134 ORTHO05D008658 7.7e-102 375.9 822 39.7
Gohir.A01G116400 Gossypium hirsutum HOM05D002134 ORTHO05D008658 2.9e-101 374.0 831 40.3
SGA_v2.0_scaffold48G18075 Striga asiatica HOM05D002134 ORTHO05D008658 1.4e-100 371.7 852 38.1
Gorai.002G128800 Gossypium raimondii HOM05D002134 ORTHO05D008658 5.5e-100 369.8 829 38.8
TPR.G12392 Trifolium pratense HOM05D002134 ORTHO05D008658 1.8e-98 364.8 874 37.6
FvH4_2g39970 Fragaria vesca HOM05D002134 ORTHO05D008658 2.3e-98 364.4 847 37.5
Gohir.D01G104800 Gossypium hirsutum HOM05D002134 ORTHO05D008658 5.1e-98 363.2 830 39.0
CSS0008789 Camellia sinensis var. sinensis HOM05D002134 ORTHO05D008658 1.1e-97 362.1 845 38.1
Rhsim07G0237200 Rhododendron simsii HOM05D002134 ORTHO05D008658 1.5e-97 361.7 775 39.7
DCAR_008767 Daucus carota HOM05D002134 ORTHO05D008658 4.4e-97 360.1 763 38.9
FAN27G2069 Fragaria x ananassa HOM05D002134 ORTHO05D008658 8.2e-96 355.9 851 37.8
Peaxi162Scf00925g00033 Petunia axillaris HOM05D002134 ORTHO05D008658 1.1e-95 355.5 797 38.8
Migut.C00708 Erythranthe guttata HOM05D002134 ORTHO05D008658 4.1e-95 353.6 854 37.5
RcHm_v2.0_Chr6g0300781 Rosa chinensis HOM05D002134 ORTHO05D008658 1.2e-94 352.1 846 37.8
Aqoxy6G01051 Aquilegia oxysepala HOM05D002134 ORTHO05D008658 1.5e-94 351.7 841 37.0
Nitab4.5_0000523g0050 Nicotiana tabacum HOM05D002134 ORTHO05D008658 2.0e-94 351.3 840 37.9
Lalb_Chr23g0266641 Lupinus albus HOM05D002134 ORTHO05D008658 4.5e-94 350.1 840 38.1
Nitab4.5_0006995g0020 Nicotiana tabacum HOM05D002134 ORTHO05D008658 5.9e-94 349.7 842 38.0
Duzib093G1270 Durio zibethinus HOM05D002134 ORTHO05D008658 1.3e-93 348.6 660 42.1
MBI16_g17456_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 1.1e-92 345.5 860 38.3
Cc10_g03060 Coffea canephora HOM05D002134 ORTHO05D008658 1.9e-92 344.7 874 35.6
Glyma.04G033100 Glycine max HOM05D002134 ORTHO05D008658 6.1e-91 339.7 831 38.3
Glyma.06G033100 Glycine max HOM05D002134 ORTHO05D008658 6.1e-91 339.7 836 38.0
Psat0s2660g0080 Pisum sativum HOM05D002134 ORTHO05D008658 1.8e-90 338.2 844 39.2
Phvul.009G057000 Phaseolus vulgaris HOM05D002134 ORTHO05D008658 8.8e-90 335.9 719 40.5
arahy.Tifrunner.gnm1.ann1.20CGAG Arachis hypogaea HOM05D002134 ORTHO05D008658 2.6e-89 334.3 834 37.4
ECA247G2410 Erigeron canadensis HOM05D002134 ORTHO05D008658 5.3e-87 326.6 862 38.1
HanXRQChr04g0105601 Helianthus annuus HOM05D002134 ORTHO05D008658 1.0e-85 322.4 673 40.6
SalBow7G3154 Salvia bowleyana HOM05D002134 ORTHO05D008658 2.2e-85 321.2 863 36.3
Lj4A785T29 Lonicera japonica HOM05D002134 ORTHO05D008658 2.1e-83 314.7 584 40.9
FAN20G2431 Fragaria x ananassa HOM05D002134 ORTHO05D003893 2.7e-83 314.3 847 36.1
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 1.4e-82 312.0 640 40.3
FAN15G0789 Fragaria x ananassa HOM05D002134 ORTHO05D003893 4.0e-82 310.5 850 36.1
PGR031G3893 Punica granatum HOM05D002134 ORTHO05D008658 1.2e-81 308.9 867 34.4
arahy.Tifrunner.gnm1.ann1.6UHH7V Arachis hypogaea HOM05D002134 ORTHO05D008658 9.7e-81 305.8 879 35.6
Sopen07g013310 Solanum pennellii HOM05D002134 ORTHO05D008658 1.3e-80 305.4 809 36.6
Solyc07g025380.3 Solanum lycopersicum HOM05D002134 ORTHO05D008658 6.3e-80 303.1 808 36.4
CAN.G52.14 Capsicum annuum HOM05D002134 ORTHO05D008658 5.3e-79 300.1 811 35.8
PGSC0003DMG400007581 Solanum tuberosum HOM05D002134 ORTHO05D008658 1.2e-78 298.9 841 35.7
Lsat_1_v5_gn_1_17581 Lactuca sativa HOM05D002134 ORTHO05D008658 1.6e-78 298.5 690 37.2
PSO541G2605 Papaver somniferum HOM05D002134 ORTHO05D008658 1.7e-77 295.0 728 37.5
PSO675G8956 Papaver somniferum HOM05D002134 ORTHO05D008658 9.4e-76 289.3 694 38.0
ATR0733G232 Amborella trichopoda HOM05D002134 ORTHO05D008658 9.1e-71 272.7 623 37.9
Hund27548 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.3e-69 268.9 598 36.8
Hund27550 Selenicereus undatus HOM05D002134 ORTHO05D008658 1.3e-69 268.9 598 36.8
THA.LOC104813840 Tarenaya hassleriana HOM05D002134 ORTHO05D008658 8.6e-69 266.2 666 36.8
Hma1.2p1_0203F.1_g086500 Hydrangea macrophylla HOM05D002134 ORTHO05D008658 8.0e-67 259.6 328 51.2
BraA07t31617Z Brassica rapa HOM05D002134 ORTHO05D008658 2.6e-65 254.6 683 36.6
MBI16_g45959_MAGBIO Magnolia biondii HOM05D002134 ORTHO05D008658 2.6e-65 254.6 798 36.0
Lalb_Chr08g0245851 Lupinus albus HOM05D002134 ORTHO05D008658 4.4e-65 253.8 833 32.9
Thhalv10019843m.g Eutrema salsugineum HOM05D002134 ORTHO05D008658 9.8e-65 252.7 669 35.6
Sc02g0006290 Simmondsia chinensis HOM05D002134 ORTHO05D008658 3.1e-63 247.7 533 37.5
A07p40750 Brassica napus HOM05D002134 ORTHO05D008658 1.2e-62 245.7 681 35.5
Zm00001eb061990 Zea mays HOM05D002134 ORTHO05D008658 1.2e-59 235.7 731 35.6
AL2G35050 Arabidopsis lyrata HOM05D002134 ORTHO05D008658 6.1e-59 233.4 821 32.0
Aa31LG4G5340 Aethionema arabicum HOM05D002134 ORTHO05D008658 1.4e-58 232.3 718 33.7
BcaC08g46976 Brassica carinata HOM05D002134 ORTHO05D008658 1.2e-57 229.2 693 33.6
AT1G75150 Arabidopsis thaliana HOM05D002134 ORTHO05D008658 2.6e-57 228.0 826 32.2
C06p49130 Brassica napus HOM05D002134 ORTHO05D008658 2.6e-57 228.0 696 34.8
BolC6t39947H Brassica oleracea HOM05D002134 ORTHO05D008658 2.6e-57 228.0 696 34.8
BcaC08g46941 Brassica carinata HOM05D000061 ORTHO05D008658 4.4e-57 227.3 698 34.8
Sp5g30280 Schrenkiella parvula HOM05D002134 ORTHO05D008658 9.8e-57 226.1 690 35.9
CARHR068480 Cardamine hirsuta HOM05D002134 ORTHO05D008658 2.4e-55 221.5 868 33.1
Carub.0002s2196 Capsella rubella HOM05D002134 ORTHO05D008658 4.1e-55 220.7 873 32.4
SEGI_00628 Sequoiadendron giganteum HOM05D002134 ORTHO05D008658 2.0e-54 218.4 862 30.2
CDE02G0502 Ceratophyllum demersum HOM05D002134 ORTHO05D008658 2.3e-53 214.9 789 30.3
EL10Ac1g01833 Beta vulgaris HOM05D002134 ORTHO05D008658 6.6e-53 213.4 766 31.6
unitig_37.g12967 Utricularia gibba HOM05D002134 ORTHO05D008658 3.1e-50 204.5 670 32.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.6e-43 182.2 472 33.1
Ah.11g043170 Amaranthus hybridus HOM05D002134 ORTHO05D008658 1.2e-41 176.0 748 31.3
AUR62034948 Chenopodium quinoa HOM05D002134 ORTHO05D008658 2.9e-40 171.4 638 29.5
Cpa.g.sc64.74 Carica papaya HOM05D002134 ORTHO05D008658 3.6e-35 154.5 565 31.3
AUR62035457 Chenopodium quinoa HOM05D002134 ORTHO05D008658 1.1e-34 152.9 585 29.1
SHI17315 Sapria himalayana HOM05D002134 ORTHO05D008658 3.1e-34 151.4 620 29.0
Pp3c7_550 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.2e-27 129.4 819 26.7
Pp3c7_551 Physcomitrium patens HOM05D002134 ORTHO05D008658 1.2e-27 129.4 819 26.7
Oeu036193.1 Olea europaea HOM05D002134 ORTHO05D008658 8.1e-27 126.7 411 33.1
HPP92_018472 Vanilla planifolia HOM05D002134 ORTHO05D008658 4.0e-26 124.4 567 28.6
SMO144G0024 Selaginella moellendorffii HOM05D002134 ORTHO05D008658 5.3e-26 124.0 688 27.8
Mapoly0032s0034 Marchantia polymorpha HOM05D002134 ORTHO05D008658 1.2e-22 112.8 667 26.7
Cpa.g.sc64.73 Carica papaya HOM05D002134 ORTHO05D008658 2.5e-20 105.1 203 41.4
HPP92_018471 Vanilla planifolia HOM05D002134 ORTHO05D008658 1.4e-18 99.4 174 41.4
Actinidia29830 Actinidia chinensis HOM05D002134 ORTHO05D008658 2.5e-12 78.6 151 41.7
Peaxi162Scf00162g00213 Petunia axillaris HOM05D000561 ORTHO05D000514 8.4e-08 63.5 177 29.4
AagrBONN_evm.TU.Sc2ySwM_362.1405 Anthoceros agrestis HOM05D051179 ORTHO05D038399 2.7e-06 58.5 51 64.7
DCAR_011210 Daucus carota HOM05D001893 ORTHO05D008658 2.7e-06 58.5 203 33.0


User provided reference genes

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