Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 2.3e-72 275.4 135 100.0
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 1.6e-68 262.7 135 95.6
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 1.0e-67 260.0 135 94.8
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.8e-64 249.2 135 91.1
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 1.9e-53 212.6 134 76.1
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 4.1e-53 211.5 135 77.8
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 4.6e-52 208.0 134 74.6
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 1.3e-51 206.5 135 73.3
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.3e-51 205.7 134 73.9
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 3.9e-51 204.9 136 76.5
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 1.9e-50 202.6 133 76.7
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 3.3e-50 201.8 136 72.8
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 7.3e-50 200.7 135 77.0
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 1.6e-49 199.5 136 72.1
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 6.2e-49 197.6 143 69.9
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 8.1e-49 197.2 138 72.5
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 8.1e-49 197.2 138 72.5
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 1.1e-48 196.8 135 70.4
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 3.1e-48 195.3 132 74.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 3.1e-48 195.3 138 75.4
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 3.1e-48 195.3 138 72.5
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 6.8e-48 194.1 137 70.8
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 8.9e-48 193.7 140 72.9
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 3.4e-47 191.8 140 70.7
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 3.4e-47 191.8 135 71.9
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 1.3e-46 189.9 137 71.5
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 1.3e-46 189.9 146 69.2
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 1.7e-46 189.5 146 65.8
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.7e-46 189.5 136 71.3
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 2.9e-46 188.7 144 68.8
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 2.9e-46 188.7 144 68.8
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 2.9e-46 188.7 145 69.0
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 2.9e-46 188.7 144 68.8
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 2.9e-46 188.7 134 70.1
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 3.7e-46 188.3 145 66.2
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 3.7e-46 188.3 116 75.9
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 4.9e-46 188.0 145 69.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 4.9e-46 188.0 145 69.0
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 8.3e-46 187.2 145 67.6
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 8.3e-46 187.2 145 67.6
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 8.3e-46 187.2 140 67.1
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 8.3e-46 187.2 140 67.1
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 8.3e-46 187.2 107 80.4
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 1.1e-45 186.8 132 68.9
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 1.1e-45 186.8 139 70.5
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 1.4e-45 186.4 135 68.9
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 1.4e-45 186.4 144 68.8
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 1.4e-45 186.4 144 68.8
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 1.9e-45 186.0 140 68.6
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 4.1e-45 184.9 137 68.6
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 5.4e-45 184.5 148 64.2
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 5.4e-45 184.5 148 64.9
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 7.1e-45 184.1 137 67.9
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 9.2e-45 183.7 149 67.1
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 1.2e-44 183.3 135 64.4
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 1.2e-44 183.3 145 65.5
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 1.6e-44 183.0 147 63.9
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 2.1e-44 182.6 139 68.3
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 3.5e-44 181.8 135 68.9
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 3.5e-44 181.8 135 67.4
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 4.6e-44 181.4 135 65.9
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 4.6e-44 181.4 135 68.9
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 6.0e-44 181.0 135 67.4
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 7.8e-44 180.6 124 72.6
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 1.7e-43 179.5 144 65.3
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 2.3e-43 179.1 134 65.7
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 5.1e-43 177.9 138 65.2
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 6.6e-43 177.6 139 67.6
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 6.6e-43 177.6 144 66.7
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 8.6e-43 177.2 137 65.7
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 1.5e-42 176.4 144 67.4
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.9e-42 176.0 133 66.9
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.9e-42 176.0 133 67.7
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 2.5e-42 175.6 137 65.7
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 2.5e-42 175.6 137 65.7
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 2.5e-42 175.6 135 65.2
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 2.5e-42 175.6 140 65.7
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 2.5e-42 175.6 135 64.4
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 4.3e-42 174.9 138 64.5
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 5.6e-42 174.5 148 61.5
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 5.6e-42 174.5 135 65.9
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 7.3e-42 174.1 136 63.2
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 7.3e-42 174.1 135 63.7
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 7.3e-42 174.1 100 80.0
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 1.6e-41 172.9 135 64.4
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 2.1e-41 172.6 135 65.9
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 2.1e-41 172.6 135 65.9
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 4.7e-41 171.4 126 65.9
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 4.7e-41 171.4 132 65.2
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 6.2e-41 171.0 138 64.5
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 1.4e-40 169.9 135 64.4
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 3.1e-40 168.7 140 62.9
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 4.0e-40 168.3 127 65.4
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 6.8e-40 167.5 99 77.8
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 8.9e-40 167.2 135 65.2
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.2e-39 166.8 140 62.9
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.6e-39 165.6 98 79.6
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 2.6e-39 165.6 98 79.6
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 4.4e-39 164.9 131 61.1
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 7.6e-39 164.1 138 60.9
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 2.2e-38 162.5 96 76.0
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 2.9e-38 162.2 129 63.6
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 8.4e-38 160.6 99 71.7
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.1e-37 158.3 113 69.9
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 2.3e-35 152.5 136 56.6
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 2.3e-35 152.5 136 56.6
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 7.3e-34 147.5 104 65.4
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 2.8e-33 145.6 112 65.2
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 1.8e-32 142.9 99 66.7
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 3.1e-32 142.1 104 64.4
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 6.9e-32 141.0 97 64.9
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.5e-31 139.8 104 60.6
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 2.7e-28 129.0 74 83.8
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 3.9e-27 125.2 109 53.2
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 3.9e-27 125.2 114 53.5
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 4.3e-26 121.7 75 76.0
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 9.6e-26 120.6 109 54.1
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 1.6e-25 119.8 98 52.0
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 3.6e-25 118.6 111 53.2
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 4.6e-20 101.7 114 44.7
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 1.8e-19 99.8 52 80.8
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 3.0e-19 99.0 94 46.8
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 5.6e-18 94.7 75 62.7
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.3e-17 93.6 75 61.3
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 3.6e-17 92.0 58 77.6
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 7.4e-10 67.8 60 56.7
Sabra05G0177600 Salix brachista HOM05D006275 ORTHO05D007839 5.8e-07 58.2 55 49.1


User provided reference genes

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