Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 2.5e-104 382.1 194 100.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.3e-96 355.1 192 91.7
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 2.6e-93 345.5 186 92.5
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 5.7e-88 327.8 192 84.9
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.1e-75 287.0 197 71.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 3.6e-74 282.0 195 73.8
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.5e-72 276.6 192 68.2
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 6.3e-71 271.2 192 68.2
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 1.1e-70 270.4 190 68.9
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.8e-70 269.6 192 66.7
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-70 269.6 192 68.8
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-70 269.6 192 68.8
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.8e-70 269.6 192 68.8
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 3.1e-70 268.9 196 66.8
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 4.1e-70 268.5 192 67.2
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.1e-70 268.5 192 68.2
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 7.0e-70 267.7 192 67.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 9.1e-70 267.3 192 68.2
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 9.1e-70 267.3 188 69.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 9.1e-70 267.3 192 69.3
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.0e-69 266.2 188 66.0
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 2.7e-69 265.8 192 67.2
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.7e-69 265.8 188 65.4
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 4.5e-69 265.0 188 71.8
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 4.5e-69 265.0 179 69.3
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 7.7e-69 264.2 192 67.7
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 7.7e-69 264.2 192 67.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 1.3e-68 263.5 192 66.1
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.9e-68 262.3 192 65.6
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 1.1e-67 260.4 192 67.2
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.1e-67 260.4 192 66.7
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.5e-67 260.0 177 70.6
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 1.5e-67 260.0 192 65.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.5e-67 259.2 192 64.6
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 7.2e-67 257.7 192 65.1
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 9.4e-67 257.3 192 63.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.2e-66 256.9 192 64.6
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.2e-66 256.9 187 64.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 3.6e-66 255.4 192 64.6
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 6.1e-66 254.6 192 63.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.3e-65 252.7 187 63.1
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.3e-65 252.7 192 63.5
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 4.0e-65 251.9 192 63.5
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.5e-64 250.0 192 63.5
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.5e-64 250.0 192 63.0
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 1.5e-64 250.0 192 61.5
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.5e-64 250.0 192 64.1
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 5.7e-64 248.1 192 64.6
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.3e-63 246.9 197 62.9
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.3e-63 246.9 189 65.1
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 8.3e-63 244.2 187 64.7
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.4e-62 243.4 194 60.8
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.4e-62 243.4 185 64.3
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 4.1e-62 241.9 193 62.7
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 5.4e-62 241.5 192 63.0
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 9.1e-62 240.7 192 59.9
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.2e-61 240.4 192 60.9
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.2e-61 240.4 192 58.3
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 2.0e-61 239.6 184 62.0
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 2.0e-61 239.6 188 58.0
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 2.7e-61 239.2 188 57.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 3.5e-61 238.8 184 62.0
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 4.5e-61 238.4 190 61.6
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 1.3e-60 236.9 178 61.8
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 1.3e-60 236.9 192 56.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 1.7e-60 236.5 192 57.8
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 2.9e-60 235.7 192 60.9
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.8e-60 235.3 184 61.4
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 8.5e-60 234.2 184 59.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.1e-59 233.8 192 56.2
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.5e-59 233.4 192 56.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.5e-59 232.6 195 57.9
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.2e-59 232.3 190 61.1
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 7.2e-59 231.1 192 55.2
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.6e-58 229.9 192 54.7
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.6e-58 229.9 192 54.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 1.6e-58 229.9 194 56.7
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 1.6e-58 229.9 192 58.3
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 2.1e-58 229.6 182 56.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.7e-58 229.2 192 54.7
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 4.7e-58 228.4 179 61.5
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.0e-57 227.3 182 56.6
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.8e-57 226.5 182 56.0
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.8e-57 226.5 191 60.2
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 2.3e-57 226.1 192 57.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 2.3e-57 226.1 192 57.3
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 3.0e-57 225.7 189 60.3
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 3.0e-57 225.7 178 59.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.2e-57 224.9 176 63.6
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 8.8e-57 224.2 156 69.2
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.2e-56 223.8 184 57.1
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 3.4e-56 222.2 192 56.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 9.8e-56 220.7 180 56.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 9.8e-56 220.7 197 54.8
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 9.8e-56 220.7 204 53.9
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 9.8e-56 220.7 192 57.8
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 1.3e-55 220.3 192 55.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.3e-55 217.6 192 57.3
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.4e-54 216.9 158 66.5
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.4e-54 216.9 192 54.2
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-54 216.9 192 54.2
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-54 216.9 192 54.2
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.8e-54 216.5 182 54.4
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 1.8e-54 216.5 180 56.1
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.4e-54 216.1 152 67.1
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.0e-54 214.5 179 55.3
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 9.2e-54 214.2 187 55.1
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 1.2e-53 213.8 211 56.9
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.6e-53 213.4 198 53.5
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 1.6e-53 213.4 182 56.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 2.7e-53 212.6 155 67.1
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.5e-53 211.8 226 49.1
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.7e-52 209.9 210 50.5
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 2.1e-50 203.0 142 68.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 6.4e-47 191.4 178 53.9
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 8.3e-47 191.0 183 50.8
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 7.0e-46 188.0 183 49.7
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.2e-45 187.2 170 54.1
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 3.5e-45 185.7 161 55.9
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.6e-43 178.3 138 62.3
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 5.6e-43 178.3 197 47.2
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 7.3e-43 177.9 149 58.4
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.4e-41 173.7 195 49.2
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.4e-41 173.7 183 48.6
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 2.3e-41 172.9 231 42.9
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 2.0e-37 159.8 143 60.8
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.7e-36 156.8 154 50.6
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.3e-35 152.5 131 57.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 5.6e-35 151.8 200 43.5
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.2e-34 150.6 182 45.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 4.0e-33 145.6 195 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 6.0e-29 131.7 183 42.1
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.3e-28 130.6 184 40.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 6.6e-28 128.3 178 40.4
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 4.3e-27 125.6 180 40.0
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.7e-23 113.6 116 48.3
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 9.2e-22 107.8 76 68.4
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.3e-19 99.4 88 56.8
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 7.6e-16 88.2 95 46.3
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 4.6e-13 79.0 69 52.2
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.5e-11 73.2 176 27.8
MELO3C003766.2 Cucumis melo HOM05D004951 ORTHO05D005840 7.3e-11 71.6 51 78.4
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 9.6e-11 71.2 139 33.8
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.2e-06 56.2 35 74.3


User provided reference genes

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