Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.6e-285 985.3 484 100.0
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 8.1e-277 956.4 484 96.1
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 3.4e-275 951.0 484 95.5
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 3.1e-268 927.9 484 92.4
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 2.7e-240 835.1 486 84.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 2.3e-239 832.0 483 83.6
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 1.5e-238 829.3 484 84.7
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 4.8e-237 824.3 484 84.3
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 4.1e-236 821.2 483 84.5
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 7.0e-236 820.5 484 84.1
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 5.9e-235 817.4 484 83.1
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 1.0e-234 816.6 483 82.8
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.3e-234 816.2 484 83.3
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.2e-234 815.5 484 82.6
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.8e-234 814.7 483 82.6
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.5e-234 813.9 484 82.9
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 8.5e-234 813.5 483 82.8
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 8.5e-234 813.5 484 82.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 1.1e-233 813.1 484 83.9
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 2.5e-233 812.0 483 82.4
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 4.2e-233 811.2 484 82.0
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.6e-232 808.1 483 81.6
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 4.7e-232 807.7 484 82.4
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 6.1e-232 807.4 484 81.2
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 6.1e-232 807.4 484 81.4
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 6.1e-232 807.4 484 81.4
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 8.0e-232 807.0 484 81.6
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.8e-231 805.8 484 81.0
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 3.0e-231 805.1 484 81.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 5.2e-231 804.3 484 81.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 5.2e-231 804.3 484 82.4
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 8.8e-231 803.5 485 80.8
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.6e-230 802.0 484 81.4
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.3e-230 801.6 484 81.4
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 5.7e-230 800.8 484 81.2
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 5.7e-230 800.8 484 81.4
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 5.7e-230 800.8 484 81.2
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.5e-230 800.4 484 81.4
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 9.7e-230 800.0 485 80.4
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 9.7e-230 800.0 485 81.0
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.2e-229 798.9 484 81.0
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 81.8
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 3.7e-229 798.1 484 81.0
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 4.8e-229 797.7 484 81.0
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.3e-229 797.3 484 81.4
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 6.3e-229 797.3 484 82.0
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.8e-228 795.8 484 81.0
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 3.1e-228 795.0 485 80.8
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 3.1e-228 795.0 438 87.4
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.5e-227 791.2 484 80.2
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.5e-227 791.2 484 80.8
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.5e-227 791.2 484 80.8
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 2.9e-226 788.5 484 80.4
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 6.5e-226 787.3 490 79.6
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 6.5e-226 787.3 484 79.8
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.9e-225 785.8 484 80.0
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.9e-225 785.8 483 80.7
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 4.2e-225 784.6 490 79.6
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 5.5e-225 784.3 515 76.5
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 9.4e-225 783.5 483 80.1
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 2.1e-224 782.3 486 80.0
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.7e-224 781.9 484 79.3
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 2.3e-223 778.9 486 79.6
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.0e-222 775.8 484 79.1
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 5.7e-222 774.2 486 78.4
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 1.3e-221 773.1 485 78.4
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.7e-221 772.7 485 78.1
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.8e-221 771.9 484 78.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 2.8e-221 771.9 486 78.2
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 6.3e-221 770.8 485 78.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.1e-220 770.0 485 78.6
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.1
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.4e-220 767.7 485 78.6
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 7.0e-220 767.3 486 78.0
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.6e-219 766.1 416 88.7
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 1.6e-219 766.1 486 78.2
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 2.7e-219 765.4 485 78.6
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.7e-219 765.4 485 77.5
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 7.7e-219 763.8 486 77.6
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.0e-218 763.5 485 78.4
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.3e-218 763.1 484 78.1
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.3e-218 762.3 485 78.6
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 9.5e-217 756.9 484 78.3
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.2e-216 756.5 484 76.4
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 2.8e-216 755.4 489 77.5
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 2.8e-216 755.4 489 77.5
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 8.0e-216 753.8 491 77.2
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 2.3e-215 752.3 487 75.4
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 7.5e-214 747.3 484 76.4
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 3.1e-212 741.9 485 76.9
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.7e-210 736.1 483 76.6
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 6.6e-210 734.2 486 75.7
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 8.6e-210 733.8 482 76.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.5e-209 733.0 485 75.9
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 1.5e-209 733.0 483 76.2
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 4.3e-209 731.5 483 76.4
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.1e-208 729.2 487 76.0
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 8.0e-208 727.2 393 87.3
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.6e-200 703.0 409 82.6
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 4.1e-196 688.3 398 78.9
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 5.4e-196 688.0 444 75.7
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.0e-194 683.7 423 76.8
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 7.3e-193 677.6 434 74.4
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 9.5e-193 677.2 389 80.5
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 3.1e-191 672.2 486 68.9
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 2.0e-190 669.5 483 71.4
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 3.0e-178 629.0 384 80.2
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 6.6e-178 627.9 392 74.5
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.9e-170 602.1 432 71.8
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 8.1e-168 594.3 389 68.9
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 6.9e-167 591.3 484 64.0
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 7.9e-163 577.8 396 66.2
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.9e-157 558.5 289 91.7
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 3.2e-156 555.8 289 92.0
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.1e-143 512.7 345 74.2
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.5e-137 493.0 271 84.1
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.8e-104 382.5 237 77.6
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.3e-101 373.6 287 67.2
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 6.2e-83 312.4 172 84.3
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.8e-62 242.3 196 61.7
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 1.3e-61 241.5 130 86.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.5e-60 237.3 139 82.0
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-58 231.9 135 81.5
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.4e-49 200.3 140 73.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 6.7e-45 186.0 158 62.0
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 4.3e-36 156.8 94 79.8
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 1.9e-31 141.4 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 4.7e-14 83.6 59 67.8
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 1.3e-11 75.5 283 26.5
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.4e-10 71.2 288 26.7
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 5.5e-07 60.1 154 28.6
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 1.2e-06 58.9 150 28.0
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.2e-06 58.9 125 30.4
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.1e-06 58.2 160 27.5
Pp3c14_11550 Physcomitrium patens HOM05D000776 ORTHO05D002281 2.1e-06 58.2 199 29.6
Psat0s1641g0040 Pisum sativum HOM05D000776 ORTHO05D001624 2.1e-06 58.2 154 26.6
Psat1g087000 Pisum sativum HOM05D000776 ORTHO05D001624 2.1e-06 58.2 154 26.0
Ca_17557_v3 Cicer arietinum L. HOM05D000776 ORTHO05D001624 2.7e-06 57.8 130 26.2
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 3.6e-06 57.4 161 26.1
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 3.6e-06 57.4 165 29.1
CSS0022914 Camellia sinensis var. sinensis HOM05D000776 ORTHO05D001624 4.7e-06 57.0 175 28.0
Psat1g087240 Pisum sativum HOM05D000776 ORTHO05D001624 8.0e-06 56.2 158 25.9


User provided reference genes

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