Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 1.5e-95 352.8 174 100.0
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 6.0e-89 330.9 172 93.6
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 6.0e-89 330.9 172 93.6
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 2.8e-86 322.0 172 91.3
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 7.6e-68 260.8 172 72.1
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.3e-67 260.0 172 71.5
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 1.7e-67 259.6 170 71.8
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 1.9e-66 256.1 172 70.3
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 2.5e-66 255.8 172 70.9
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 4.2e-66 255.0 172 70.3
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 7.2e-66 254.2 171 69.6
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.0e-64 250.4 174 68.4
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.8e-64 249.6 172 69.2
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 3.0e-64 248.8 167 70.7
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 3.9e-64 248.4 170 68.8
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 1.1e-63 246.9 172 69.2
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 1.5e-63 246.5 172 68.6
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 7.4e-63 244.2 172 67.4
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 7.4e-63 244.2 173 67.1
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 9.7e-63 243.8 167 68.3
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 1.3e-62 243.4 172 68.0
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 1.7e-62 243.0 171 67.8
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 3.7e-62 241.9 165 69.7
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 8.2e-62 240.7 173 67.1
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 2.4e-61 239.2 170 67.1
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 2.4e-61 239.2 170 68.2
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 2.4e-61 239.2 172 68.0
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 3.1e-61 238.8 164 68.9
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 3.1e-61 238.8 174 69.5
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 5.3e-61 238.0 179 64.8
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 9.1e-61 237.3 172 64.5
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 1.2e-60 236.9 173 66.5
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 1.5e-60 236.5 172 66.3
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 2.0e-60 236.1 172 64.0
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 2.0e-60 236.1 170 65.9
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 2.0e-60 236.1 171 65.5
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 2.6e-60 235.7 170 65.9
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 3.4e-60 235.3 155 71.0
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 4.5e-60 235.0 162 68.5
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 5.9e-60 234.6 174 66.1
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 5.9e-60 234.6 169 66.3
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 7.7e-60 234.2 172 64.0
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.0e-59 233.8 172 65.7
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.3e-59 233.4 171 65.5
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.7e-59 233.0 172 63.4
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 1.7e-59 233.0 172 64.0
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 2.2e-59 232.6 172 64.0
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 2.9e-59 232.3 161 67.7
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 3.8e-59 231.9 173 64.2
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 3.8e-59 231.9 173 62.4
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 6.5e-59 231.1 174 64.9
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 6.5e-59 231.1 174 64.9
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 6.5e-59 231.1 172 64.0
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 8.5e-59 230.7 172 62.8
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 1.9e-58 229.6 174 67.8
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.9e-58 229.6 174 65.5
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 3.2e-58 228.8 174 66.1
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 4.2e-58 228.4 154 72.1
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.5e-58 228.0 174 64.9
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 5.5e-58 228.0 168 64.3
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 5.5e-58 228.0 159 66.0
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 7.2e-58 227.6 173 65.9
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 9.4e-58 227.3 174 64.9
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.6e-57 226.5 173 66.5
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 1.6e-57 226.5 173 66.5
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 2.1e-57 226.1 174 63.8
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 2.1e-57 226.1 174 63.8
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 2.1e-57 226.1 172 64.5
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 2.7e-57 225.7 172 62.2
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 4.7e-57 224.9 173 64.7
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 4.7e-57 224.9 161 65.2
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 4.7e-57 224.9 154 70.8
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 4.7e-57 224.9 173 65.9
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 1.8e-56 223.0 167 61.7
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 2.3e-56 222.6 164 64.0
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 3.9e-56 221.9 164 64.0
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 3.9e-56 221.9 166 63.3
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 5.1e-56 221.5 168 63.7
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 8.8e-56 220.7 171 60.2
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 3.3e-55 218.8 171 60.8
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.3e-55 218.8 162 63.6
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 4.4e-55 218.4 164 63.4
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 5.7e-55 218.0 168 63.7
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 1.3e-54 216.9 172 61.6
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.2e-54 216.1 162 62.3
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 2.2e-54 216.1 176 60.2
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 4.8e-54 214.9 171 60.2
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 4.8e-54 214.9 172 59.3
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 8.2e-54 214.2 165 60.0
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 8.2e-54 214.2 152 65.8
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 3.4e-52 208.8 171 57.9
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 4.5e-52 208.4 173 59.0
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 5.9e-52 208.0 159 61.6
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 5.9e-52 208.0 170 61.2
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 2.2e-51 206.1 172 58.1
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 3.8e-51 205.3 155 63.2
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 3.8e-51 205.3 173 58.4
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 1.1e-50 203.8 172 59.3
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.1e-50 203.8 172 58.7
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 3.2e-50 202.2 173 61.3
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 3.2e-50 202.2 172 56.4
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 4.2e-50 201.8 172 57.6
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 2.3e-48 196.1 167 58.1
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 1.7e-46 189.9 153 59.5
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 1.7e-46 189.9 151 60.9
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 1.1e-45 187.2 153 59.5
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.8e-45 186.4 153 58.2
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 1.0e-43 180.6 119 69.7
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.9e-42 176.4 139 59.0
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 4.2e-42 175.3 153 56.2
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 4.2e-42 175.3 128 64.1
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 1.4e-40 170.2 119 65.5
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 2.3e-40 169.5 171 50.9
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 1.3e-35 153.7 165 45.5
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 4.7e-33 145.2 109 63.3
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 2.4e-29 132.9 153 45.1
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 2.7e-28 129.4 146 45.2
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 7.5e-23 111.3 94 58.5
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 7.5e-23 111.3 94 58.5
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 5.6e-18 95.1 105 44.8
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.3e-16 89.7 82 56.1
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 4.1e-13 79.0 67 56.7
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.3e-10 69.3 54 61.1
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.3e-10 69.3 54 61.1
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 1.2e-09 67.4 56 57.1
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 8.0e-09 64.7 64 54.7
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 1.4e-08 63.9 149 35.6
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.2e-07 60.8 54 55.6
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 3.4e-07 59.3 61 50.8


User provided reference genes

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