Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017710 Citrullus lanatus HOM05D023369 ORTHO05D025092 5.2e-46 187.6 109 100.0
CsaV3_4G035470 Cucumis sativus L. HOM05D023369 ORTHO05D025092 7.5e-13 77.4 66 77.3
Sed0003286 Sechium edule HOM05D000533 ORTHO05D001069 1.7e-12 76.3 38 100.0
Sed0012936 Sechium edule HOM05D000533 ORTHO05D001069 1.7e-12 76.3 38 100.0
Sed0022170 Sechium edule HOM05D000533 ORTHO05D001069 1.7e-12 76.3 38 100.0
Sed0003538 Sechium edule HOM05D000533 ORTHO05D001069 4.9e-12 74.7 38 97.4
A04p09580 Brassica napus HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
C01p34650 Brassica napus HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
BolC1t03435H Brassica oleracea HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
BolSC28t60324H Brassica oleracea HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
BolSC28t60426H Brassica oleracea HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
BraSC48t46291Z Brassica rapa HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
MELO3C016855.2 Cucumis melo HOM05D023369 ORTHO05D025092 9.2e-11 70.5 44 93.2
RhsimMtG0002000 Rhododendron simsii HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
SabraMtG0006500 Salix brachista HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
Sp3g25560 Schrenkiella parvula HOM05D000533 ORTHO05D001069 9.2e-11 70.5 38 97.4
arahy.Tifrunner.gnm1.ann1.0LI3ZC Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.1S94M9 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.ELH4X7 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.PQN9HV Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.VAXL0Q Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.VVPQ8E Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.WRNL5Y Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
arahy.Tifrunner.gnm1.ann1.WT8VJC Arachis hypogaea HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
Cpa.g.sc263.15 Carica papaya HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
Glyma.15G187666 Glycine max HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
Glyma.15G188000 Glycine max HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
LjContig00315g0008577 Lotus japonicus HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
Lalb_Chr00c24g0407281 Lupinus albus HOM05D000533 ORTHO05D001069 3.5e-10 68.6 38 94.7
Sed0017204 Sechium edule HOM05D023369 ORTHO05D025092 4.6e-10 68.2 65 69.2
MSTRG.26041 Avicennia marina HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
HanXRQChr04g0109061 Helianthus annuus HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
HanXRQChr14g0434361 Helianthus annuus HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
HanXRQMTg0579581 Helianthus annuus HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
Oeu013777.2 Olea europaea HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
SalBow1G6484 Salvia bowleyana HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
unitig_87.g27982 Utricularia gibba HOM05D000533 ORTHO05D001069 6.0e-10 67.8 38 94.7
BraSC159t45735Z Brassica rapa HOM05D000533 ORTHO05D001069 7.8e-10 67.4 33 100.0
BraSC48t46305Z Brassica rapa HOM05D000533 ORTHO05D001069 7.8e-10 67.4 33 100.0
Ca_17162_v3 Cicer arietinum L. HOM05D000743 ORTHO05D000580 7.8e-10 67.4 38 92.1
Ca_26708_v3 Cicer arietinum L. HOM05D000533 ORTHO05D001069 7.8e-10 67.4 38 92.1
TPR.G29698 Trifolium pratense HOM05D000533 ORTHO05D001069 7.8e-10 67.4 38 92.1
arahy.Tifrunner.gnm1.ann1.C1VVMY Arachis hypogaea HOM05D000533 ORTHO05D001069 1.7e-09 66.2 38 92.1
Ah.10g028350 Amaranthus hybridus HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Aqoxy3G01139 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Aqoxy4G01612 Aquilegia oxysepala HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
CAN.G1632.17 Capsicum annuum HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
AUR62026824 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
AUR62043914 Chenopodium quinoa HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
HanXRQChr01g0003461 Helianthus annuus HOM05D000533 ORTHO05D001069 2.3e-09 65.9 37 94.6
Lsat_1_v5_gn_5_152661 Lactuca sativa HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Lsat_1_v5_gn_7_25900 Lactuca sativa HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Lsat_1_v5_gn_7_99760 Lactuca sativa HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Lj2A1229G104 Lonicera japonica HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Nitab4.5_0000623g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Peaxi162Scf00197g00026 Petunia axillaris HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Peaxi162Scf00864g00009 Petunia axillaris HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Peaxi162Scf03098g00003 Petunia axillaris HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Solyc00g500185.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
Sopen05g012880 Solanum pennellii HOM05D000533 ORTHO05D001069 2.3e-09 65.9 38 92.1
CAN.G4.19 Capsicum annuum HOM05D000533 ORTHO05D001069 6.6e-09 64.3 38 89.5
Lsat_1_v5_gn_4_123980 Lactuca sativa HOM05D000533 ORTHO05D001069 6.6e-09 64.3 38 89.5
Nitab4.5_0000127g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.6e-09 64.3 38 86.8
Nitab4.5_0007336g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 6.6e-09 64.3 38 89.5
PGSC0003DMG400029135 Solanum tuberosum HOM05D000533 ORTHO05D001069 6.6e-09 64.3 38 89.5
SHI42239 Sapria himalayana HOM05D000533 ORTHO05D001069 8.6e-09 63.9 38 89.5
Cfa023036 Carpinus fangiana HOM05D000533 ORTHO05D001069 1.1e-08 63.5 36 88.9
GSVIVG01004958001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.1e-08 63.5 38 89.5
GSVIVG01006220001 Vitis vinifera HOM05D000533 ORTHO05D001069 1.1e-08 63.5 38 89.5
Nitab4.5_0001919g0100 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.5e-08 63.2 38 86.8
Nitab4.5_0002287g0110 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.5e-08 63.2 38 86.8
Lsat_1_v5_gn_5_16060 Lactuca sativa HOM05D000533 ORTHO05D001069 1.9e-08 62.8 33 93.9
CAN.G497.41 Capsicum annuum HOM05D000533 ORTHO05D001069 3.3e-08 62.0 38 84.2
Nitab4.5_0006806g0150 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.3e-08 62.0 38 86.8
Nitab4.5_0001152g0980 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.3e-08 60.8 36 86.1
Sopen05g012870 Solanum pennellii HOM05D000533 ORTHO05D001069 9.5e-08 60.5 38 86.8
CAN.G811.5 Capsicum annuum HOM05D000533 ORTHO05D001069 2.8e-07 58.9 39 79.5
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 2.8e-07 58.9 38 81.6
Nitab4.5_0002418g0130 Nicotiana tabacum HOM05D000533 ORTHO05D001069 4.7e-07 58.2 36 80.6
ATMG00510 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 8.0e-07 57.4 28 96.4
SEGI_01046 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 8.0e-07 57.4 28 96.4
SEGI_08012 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 8.0e-07 57.4 28 96.4
SEGI_25166 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 8.0e-07 57.4 28 96.4
Oeu014139.1 Olea europaea HOM05D000533 ORTHO05D007817 1.1e-06 57.0 33 87.9
CANSAT16G0052 Cannabis sativa HOM05D000533 ORTHO05D001069 1.8e-06 56.2 28 96.4
CAN.G993.11 Capsicum annuum HOM05D000533 ORTHO05D001069 1.8e-06 56.2 36 77.8
FvH4_2g05080 Fragaria vesca HOM05D000533 ORTHO05D001069 1.8e-06 56.2 26 100.0
FvH4_c1g00130 Fragaria vesca HOM05D000533 ORTHO05D001069 1.8e-06 56.2 26 100.0
FAN20G0581 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.8e-06 56.2 26 100.0
Nitab4.5_0001152g0630 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.8e-06 56.2 38 78.9
RcHm_v2.0_MTg0498261 Rosa chinensis HOM05D000533 ORTHO05D001069 1.8e-06 56.2 26 100.0
Solyc01g065810.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 2.3e-06 55.8 32 84.4


User provided reference genes

Program Settings