Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 2.3e-117 425.6 221 100.0
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.3e-104 383.3 220 89.5
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 1.6e-94 349.7 217 82.9
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.6e-86 323.2 217 77.4
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 1.1e-84 317.0 217 76.5
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 2.5e-84 315.8 214 75.7
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 7.4e-84 314.3 206 77.7
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 2.8e-83 312.4 217 75.6
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.4e-82 309.3 216 74.1
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 4.1e-82 308.5 217 74.7
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 4.1e-82 308.5 217 74.7
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 6.9e-82 307.8 216 73.6
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 9.0e-82 307.4 217 72.4
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 2.0e-81 306.2 208 76.0
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 2.0e-81 306.2 168 92.3
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 7.7e-81 304.3 216 74.1
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 1.0e-80 303.9 216 74.1
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.3e-80 303.5 214 72.9
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 2.2e-80 302.8 214 72.9
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 5.0e-80 301.6 217 74.7
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 5.0e-80 301.6 204 76.0
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 6.5e-80 301.2 217 72.4
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.9e-79 299.7 220 71.8
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 3.2e-79 298.9 220 70.9
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 9.4e-79 297.4 216 72.2
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 9.4e-79 297.4 224 69.2
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 2.1e-78 296.2 217 71.9
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.7e-78 295.8 220 71.4
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 4.6e-78 295.0 216 73.6
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 1.8e-77 293.1 216 69.9
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 2.3e-77 292.7 216 71.8
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 3.0e-77 292.4 216 70.4
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 3.9e-77 292.0 219 70.8
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 5.1e-77 291.6 236 66.9
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 6.7e-77 291.2 221 69.7
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 6.7e-77 291.2 220 69.5
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 8.8e-77 290.8 220 68.6
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 3.3e-76 288.9 239 65.3
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 9.7e-76 287.3 222 68.5
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.7e-75 286.6 216 69.9
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 2.8e-75 285.8 215 68.8
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 6.3e-75 284.6 219 69.9
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 6.3e-75 284.6 218 69.3
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 1.4e-74 283.5 215 70.2
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 1.4e-74 283.5 215 71.2
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 3.1e-74 282.3 215 70.7
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.1e-74 282.3 214 68.2
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 4.1e-74 282.0 214 68.2
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 5.3e-74 281.6 216 69.0
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 5.3e-74 281.6 226 68.6
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 5.3e-74 281.6 216 71.3
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 5.3e-74 281.6 215 70.2
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 6.9e-74 281.2 215 68.4
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 1.2e-73 280.4 220 67.7
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.2e-73 280.4 216 67.6
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.5e-73 280.0 216 68.5
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 2.6e-73 279.3 215 68.8
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 1.0e-72 277.3 216 68.5
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 1.7e-72 276.6 191 75.4
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 2.2e-72 276.2 216 68.1
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 8.5e-72 274.2 220 66.4
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.4e-71 273.5 216 65.3
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 9.4e-71 270.8 214 68.2
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.6e-70 270.0 214 65.9
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.3e-69 266.2 221 64.3
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 1.1e-68 263.8 222 64.9
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.5e-68 263.5 167 80.8
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.5e-68 263.5 221 63.3
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 2.6e-68 262.7 223 67.3
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 2.6e-68 262.7 167 79.6
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.3e-67 260.4 216 64.4
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.7e-67 260.0 196 67.9
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 6.3e-67 258.1 232 62.1
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 6.3e-67 258.1 183 71.6
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 1.1e-66 257.3 221 64.3
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 3.1e-66 255.8 213 62.0
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-65 253.8 216 66.7
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 3.5e-65 252.3 167 75.4
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 5.9e-65 251.5 167 75.4
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 6.5e-64 248.1 193 67.4
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 3.2e-63 245.7 155 80.0
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 4.2e-63 245.4 170 73.5
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.0e-56 224.2 154 78.6
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 4.2e-55 218.8 223 52.9
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 7.2e-55 218.0 228 56.1
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 4.0e-53 212.2 215 57.7
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 1.5e-52 210.3 138 74.6
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.1e-50 202.6 140 70.0
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.2e-48 196.4 154 70.8
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 6.3e-43 178.3 136 64.7
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 3.1e-42 176.0 145 69.7
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 4.1e-42 175.6 145 69.0
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.1e-39 167.5 216 49.5
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 6.4e-27 125.2 95 69.5
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.3e-24 116.7 76 81.6
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.3e-24 116.7 76 81.6
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 8.1e-22 108.2 222 36.0
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 6.4e-19 98.6 59 76.3
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 1.1e-18 97.8 71 71.8
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 2.5e-15 86.7 73 49.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 9.5e-15 84.7 200 34.0
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.8e-13 80.5 81 59.3
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 8.9e-13 78.2 157 36.9


User provided reference genes

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