Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 5.2e-307 1057.0 568 100.0
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.9e-237 825.9 581 79.9
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 1.5e-181 640.2 568 68.5
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 4.6e-130 469.2 313 84.7
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 5.9e-85 319.3 581 41.8
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 4.0e-81 306.6 614 40.6
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 9.8e-80 302.0 392 50.5
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 8.3e-79 298.9 558 44.4
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 3.5e-77 293.5 583 41.9
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 2.3e-76 290.8 562 43.8
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.2e-74 285.0 565 40.9
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.7e-74 283.1 562 40.7
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.0e-74 282.3 496 44.2
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.4e-73 281.6 522 40.6
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.8e-73 281.2 519 43.7
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.3e-73 280.8 564 40.4
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 5.2e-73 279.6 635 40.9
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 6.8e-73 279.3 564 41.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 8.9e-73 278.9 619 40.7
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.2e-72 278.5 378 50.0
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.2e-72 278.5 523 44.6
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.0e-72 277.7 493 42.0
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.4e-72 276.9 585 39.0
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 9.8e-72 275.4 437 45.1
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 9.8e-72 275.4 635 38.0
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.4e-70 271.6 475 43.2
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.8e-70 271.2 528 40.7
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.7e-69 267.3 664 37.2
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.5e-69 266.9 581 41.0
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 3.5e-69 266.9 425 47.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 2.9e-68 263.8 452 42.0
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 5.0e-68 263.1 633 35.2
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 4.3e-67 260.0 569 38.8
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 2.1e-66 257.7 648 34.7
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.0e-66 255.8 455 44.2
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 1.2e-64 251.9 625 34.6
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.2e-64 251.9 623 36.4
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.4e-64 250.4 551 39.2
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.3e-63 248.4 561 37.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 3.2e-62 243.8 375 45.3
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 3.2e-62 243.8 453 41.5
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 5.4e-62 243.0 358 49.4
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 3.5e-61 240.4 452 40.3
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 2.3e-60 237.7 620 35.6
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 5.0e-60 236.5 352 45.5
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.5e-59 235.0 352 42.9
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.8e-58 230.7 449 38.3
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 1.4e-57 228.4 589 34.1
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 1.4e-57 228.4 425 44.5
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.6e-56 224.2 632 37.0
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.7e-55 220.3 580 37.2
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.7e-55 220.3 493 38.5
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.2e-54 217.2 575 35.7
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.2e-53 215.3 575 37.0
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 4.6e-53 213.4 518 33.6
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 1.0e-52 212.2 524 36.5
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 5.1e-52 209.9 341 43.4
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.9e-51 208.0 338 45.6
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 3.3e-51 207.2 315 43.5
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 4.3e-51 206.8 532 34.6
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 5.6e-51 206.5 576 36.5
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 9.5e-51 205.7 325 43.1
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 9.5e-51 205.7 325 43.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.6e-50 204.9 315 43.2
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 3.6e-50 203.8 325 42.8
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 3.6e-50 203.8 325 40.3
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 3.6e-50 203.8 594 33.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 3.6e-50 203.8 532 35.0
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.8e-49 201.4 597 32.0
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.1e-49 200.7 529 34.8
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 6.8e-49 199.5 314 43.9
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 6.8e-49 199.5 542 34.5
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.2e-48 198.7 446 36.8
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 5.8e-48 196.4 315 42.5
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.3e-47 195.3 546 33.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 4.9e-47 193.4 325 39.1
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.9e-47 193.4 589 34.6
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 6.4e-47 193.0 318 41.2
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-46 192.2 315 44.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.1e-46 192.2 315 44.8
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-46 191.8 585 30.9
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.4e-46 191.0 445 39.1
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 2.4e-46 191.0 716 28.9
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 5.4e-46 189.9 242 46.7
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 9.2e-46 189.1 357 42.3
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 9.2e-46 189.1 439 34.9
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 7.8e-45 186.0 416 38.0
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 2.3e-44 184.5 468 35.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 3.0e-44 184.1 322 44.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 6.6e-44 183.0 586 32.4
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.4e-41 175.3 551 35.4
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 6.8e-41 172.9 340 43.2
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.4e-40 170.6 396 38.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 9.9e-40 169.1 319 42.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.2e-39 167.9 669 29.9
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 4.9e-39 166.8 334 43.1
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 6.4e-39 166.4 183 50.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 2.1e-37 161.4 558 33.9
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 2.7e-37 161.0 331 40.8
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 2.7e-37 161.0 311 37.9
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 4.6e-37 160.2 405 38.5
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 7.8e-37 159.5 324 41.7
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-36 158.7 329 35.9
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.7e-36 158.3 332 38.6
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.1e-34 151.4 521 31.7
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 4.0e-33 147.1 563 32.5
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.6e-32 144.4 523 31.5
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 7.6e-32 142.9 201 45.3
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 4.9e-31 140.2 600 30.5
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 4.3e-27 127.1 466 29.6
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 7.3e-27 126.3 228 37.3
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 7.3e-27 126.3 395 32.7
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 7.3e-27 126.3 365 31.5
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.8e-26 124.4 629 27.2
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 4.5e-24 117.1 222 37.8
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.7e-23 115.2 367 31.6
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 4.9e-23 113.6 161 52.2
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.1e-22 112.5 321 32.1
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.3e-20 105.5 436 29.4
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 8.7e-20 102.8 193 44.0
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.1e-17 95.9 335 29.9
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.4e-17 95.5 391 28.4
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 2.9e-15 87.8 535 25.2
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 6.5e-15 86.7 386 28.8
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 1.4e-14 85.5 101 49.5
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 4.6e-13 80.5 212 33.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 6.0e-13 80.1 98 48.0
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 5.1e-12 77.0 212 30.7
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 8.7e-12 76.3 326 28.5
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.5e-11 75.5 371 25.1
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 1.9e-11 75.1 70 55.7
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 7.4e-11 73.2 218 35.8
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 4.1e-09 67.4 243 27.2
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.2e-08 65.9 284 33.5
MELO3C019915.2 Cucumis melo HOM05D003044 ORTHO05D001869 1.5e-08 65.5 317 24.0
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 2.6e-08 64.7 53 62.3
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 1.0e-07 62.8 262 26.7
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 1.3e-07 62.4 142 35.9
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.7e-07 62.0 259 27.4
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 3.8e-07 60.8 248 25.4
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 5.0e-07 60.5 252 27.4
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 6.5e-07 60.1 244 28.7
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 6.5e-07 60.1 259 29.3
HanXRQChr07g0194411 Helianthus annuus HOM05D003044 ORTHO05D001869 8.4e-07 59.7 251 27.5
Cc06_g08320 Coffea canephora HOM05D006756 ORTHO05D001869 1.4e-06 58.9 258 26.7
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 1.9e-06 58.5 267 27.7
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 3.2e-06 57.8 261 26.8
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 4.2e-06 57.4 248 29.4
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 4.2e-06 57.4 275 25.8
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 4.2e-06 57.4 259 28.2
THA.LOC104823155 Tarenaya hassleriana HOM05D003044 ORTHO05D001869 5.5e-06 57.0 266 26.7
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 7.1e-06 56.6 335 27.5
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 7.1e-06 56.6 252 27.4
CsaV3_6G004440 Cucumis sativus L. HOM05D003044 ORTHO05D001869 9.3e-06 56.2 298 23.5


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