Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 2.1e-92 342.4 179 100.0
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 2.3e-75 285.8 158 91.1
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 9.9e-71 270.4 178 80.9
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 7.1e-69 264.2 150 89.3
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 4.0e-64 248.4 158 76.6
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 5.8e-63 244.6 155 77.4
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 3.8e-62 241.9 152 77.0
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 3.8e-62 241.9 156 75.0
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 3.8e-62 241.9 152 76.3
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 8.4e-62 240.7 155 74.8
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 2.5e-61 239.2 158 73.4
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 2.5e-61 239.2 161 72.7
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 2.5e-61 239.2 155 75.5
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 7.1e-61 237.7 157 72.0
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 3.5e-60 235.3 146 77.4
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 4.6e-60 235.0 155 74.8
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 1.0e-59 233.8 157 73.2
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 5.1e-59 231.5 156 73.1
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 8.7e-59 230.7 154 72.7
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 1.1e-58 230.3 155 71.0
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.9e-58 229.6 151 74.2
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 3.3e-58 228.8 154 73.4
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 3.3e-58 228.8 148 73.6
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 7.4e-58 227.6 158 69.0
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 7.4e-58 227.6 158 69.0
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 9.6e-58 227.3 148 72.3
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 9.6e-58 227.3 151 73.5
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 1.3e-57 226.9 158 68.4
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 1.6e-57 226.5 151 73.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 1.6e-57 226.5 158 69.0
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 2.1e-57 226.1 173 67.6
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 2.8e-57 225.7 151 74.2
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 3.7e-57 225.3 162 69.1
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 3.7e-57 225.3 162 69.1
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 6.2e-57 224.6 164 70.1
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 8.2e-57 224.2 149 73.8
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 4.0e-56 221.9 149 74.5
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 3.4e-55 218.8 158 66.5
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 4.5e-55 218.4 158 67.1
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 5.8e-55 218.0 148 71.6
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 7.6e-55 217.6 152 66.4
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 1.0e-54 217.2 151 69.5
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 2.9e-54 215.7 158 65.8
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 5.0e-54 214.9 152 67.1
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 6.5e-54 214.5 161 64.6
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 1.9e-53 213.0 154 66.2
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 2.5e-53 212.6 160 66.2
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 3.2e-53 212.2 158 65.2
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 3.2e-53 212.2 150 66.7
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 5.5e-53 211.5 159 66.0
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 9.3e-53 210.7 158 64.6
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 9.3e-53 210.7 158 64.6
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 9.3e-53 210.7 153 66.7
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 9.3e-53 210.7 153 66.7
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 1.6e-52 209.9 159 66.0
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 2.1e-52 209.5 159 65.4
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 2.1e-52 209.5 159 66.0
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 2.1e-52 209.5 159 65.4
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 2.1e-52 209.5 154 64.9
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 4.6e-52 208.4 150 66.7
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 7.9e-52 207.6 160 63.8
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.3e-51 206.8 158 63.3
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 6.7e-51 204.5 154 63.0
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 3.3e-50 202.2 146 65.8
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 3.3e-50 202.2 139 69.8
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 4.3e-50 201.8 139 68.3
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 4.3e-50 201.8 150 64.7
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 7.4e-50 201.1 119 80.7
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 1.2e-47 193.7 141 66.7
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 5.9e-47 191.4 150 59.3
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 5.9e-47 191.4 148 63.5
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 7.7e-47 191.0 139 67.6
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 7.7e-47 191.0 143 62.9
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 1.7e-46 189.9 139 66.9
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 2.2e-46 189.5 147 59.9
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 5.0e-46 188.3 148 65.5
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 8.5e-46 187.6 153 59.5
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.4e-45 186.8 157 60.5
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 1.9e-45 186.4 119 76.5
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 9.4e-45 184.1 125 69.6
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 4.6e-44 181.8 146 65.1
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 8.2e-41 171.0 158 58.9
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 3.1e-40 169.1 238 42.9
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 4.1e-40 168.7 148 60.1
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 6.9e-40 167.9 182 48.4
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 9.1e-40 167.5 120 65.8
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 3.4e-39 165.6 149 54.4
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 5.9e-39 164.9 132 57.6
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 1.7e-38 163.3 115 65.2
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 3.8e-38 162.2 112 65.2
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 3.8e-38 162.2 119 64.7
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 3.8e-38 162.2 142 54.2
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 5.0e-38 161.8 157 58.6
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 6.5e-38 161.4 125 64.8
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 3.2e-37 159.1 142 53.5
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 4.2e-37 158.7 142 53.5
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 1.2e-36 157.1 112 62.5
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 3.0e-35 152.5 107 70.1
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 1.1e-34 150.6 154 50.6
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 2.0e-31 139.8 139 48.2
Haze_21697 Corylus avellana HOM05D000022 ORTHO05D010831 6.5e-30 134.8 109 61.5
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 3.6e-28 129.0 97 64.9
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 6.1e-28 128.3 148 42.6
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 1.8e-27 126.7 88 67.0
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 2.3e-27 126.3 143 46.9
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 8.8e-27 124.4 92 65.2
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 3.3e-26 122.5 91 65.9
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 2.9e-22 109.4 78 64.1
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 9.4e-21 104.4 69 73.9
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 1.0e-19 100.9 69 68.1
Hma1.2p1_0443F.1_g154040 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.4e-18 95.9 61 67.2
ECA238G0229 Erigeron canadensis HOM05D007029 ORTHO05D008258 1.4e-16 90.5 86 48.8
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 2.7e-15 86.3 121 38.8
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 3.5e-15 85.9 113 48.7
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 3.0e-11 72.8 43 79.1
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 4.4e-10 68.9 135 29.6
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.8e-08 63.5 45 64.4


User provided reference genes

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