Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 0.0e+00 1379.8 715 100.0
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 1170.6 675 89.3
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 1120.5 675 86.1
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 5.0e-206 721.8 680 57.2
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 9.4e-205 717.6 677 56.7
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 6.1e-204 714.9 681 56.8
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 2.3e-203 713.0 674 56.4
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 1.1e-202 710.7 678 55.5
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 2.2e-201 706.4 677 56.4
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 5.3e-200 701.8 679 55.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 1.2e-199 700.7 684 56.3
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 2.9e-198 696.0 677 54.7
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 6.5e-198 694.9 680 54.6
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 1.5e-197 693.7 677 54.2
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 2.5e-197 693.0 675 53.6
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 2.1e-196 689.9 674 57.0
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 6.1e-196 688.3 676 55.3
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 1.8e-195 686.8 744 52.7
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 1.5e-194 683.7 690 54.3
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 3.7e-193 679.1 682 53.7
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 2.0e-191 673.3 675 55.7
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 5.0e-190 668.7 677 54.7
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 4.7e-188 662.1 689 53.0
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 9.8e-186 654.4 777 48.1
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 2.2e-185 653.3 675 53.2
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 7.7e-183 644.8 673 53.6
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 1.7e-182 643.7 677 52.6
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 1.1e-181 641.0 674 53.1
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 1.5e-181 640.6 684 52.3
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 7.2e-181 638.3 672 52.2
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 7.2e-181 638.3 675 51.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 2.8e-180 636.3 688 50.6
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 1.0e-179 634.4 681 52.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 2.3e-179 633.3 673 52.3
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 2.0e-178 630.2 746 48.5
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 5.7e-178 628.6 684 51.8
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 9.8e-178 627.9 686 50.3
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 2.2e-177 626.7 674 51.6
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 9.2e-176 621.3 687 50.4
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 1.6e-175 620.5 674 51.8
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 2.0e-175 620.2 676 51.0
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.5e-175 619.0 678 50.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 7.8e-175 618.2 679 50.1
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 5.0e-174 615.5 684 49.6
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 8.6e-174 614.8 676 51.9
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 7.3e-173 611.7 681 52.0
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 2.1e-172 610.1 681 49.2
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 3.6e-172 609.4 682 50.3
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 3.6e-172 609.4 684 48.8
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 1.4e-171 607.4 682 49.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 1.7e-169 600.5 672 49.3
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 9.2e-168 594.7 674 48.7
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 9.2e-168 594.7 691 49.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 1.6e-167 594.0 724 47.7
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.3e-166 590.1 723 48.0
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 5.6e-165 585.5 682 49.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 5.6e-165 585.5 676 48.7
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 2.1e-164 583.6 717 47.4
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.4e-163 580.9 702 48.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 6.8e-163 578.6 676 47.8
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 1.2e-162 577.8 676 48.4
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 4.9e-161 572.4 676 47.5
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 2.4e-160 570.1 676 47.5
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 9.2e-160 568.2 676 47.3
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 1.2e-156 557.8 679 46.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 1.6e-156 557.4 703 47.1
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 5.2e-155 552.4 701 46.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 9.5e-149 531.6 680 46.2
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 2.6e-146 523.5 681 45.1
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 4.1e-144 516.2 680 45.1
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 7.8e-143 511.9 681 44.8
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.9e-141 507.3 677 45.3
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 2.4e-139 500.4 685 45.3
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.9e-137 492.7 677 43.3
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 6.0e-135 485.7 685 43.1
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 3.3e-133 479.9 721 40.8
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.2e-128 463.0 609 45.6
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 2.1e-127 460.7 483 50.5
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 2.1e-116 424.1 358 60.3
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 9.0e-115 418.7 678 38.1
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.6e-111 407.9 476 45.8
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 2.5e-109 400.6 672 37.8
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 3.7e-108 396.7 360 57.8
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 5.5e-104 382.9 360 54.4
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 1.5e-101 374.8 350 56.3
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.2e-98 365.2 360 56.1
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 8.2e-84 315.8 372 46.8
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 5.7e-77 293.1 764 31.3
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 1.7e-73 281.6 869 29.1
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 1.8e-70 271.6 320 48.1
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 4.0e-54 217.2 317 40.7
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 4.0e-54 217.2 164 66.5
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 9.8e-53 212.6 319 40.8
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.1e-51 209.1 318 42.1
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.3e-49 202.2 188 55.9
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 9.8e-45 186.0 324 39.5
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 1.3e-44 185.7 641 29.0
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 4.3e-40 170.6 93 89.2
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 1.2e-39 169.1 761 25.9
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 1.6e-39 168.7 740 25.9
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.5e-29 135.6 141 48.2
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 8.1e-23 113.2 120 47.5
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 4.8e-15 87.4 60 71.7
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.4e-14 85.9 57 75.4
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 2.3e-09 68.6 72 52.8
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 9.0e-06 56.6 50 56.0


User provided reference genes

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